Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01377 ATGGTGTTCTTATTCCCAATGCTTCAGTCCATTAAGCTCCAATCATTATGTCTGTTTTTACTTCTAATGGTCATTTCTCTCCATGCACCATTCTCTTCCTCACTCTCACTTCAACACACAGAAGCCAACGCTTTGTTGAAGTGGAAAGCAAGCCTTCACAACCCAAGTCAAACGTTGCTATCTTCATGGAATAATGGCAATACTTCATGCAATTGGCTTGGAATTGCTTCTGACCACTCAGGATCAGTCTCCAACATCAATCTTACAAACATTGGATTAAGTGGTACGCTTCAAACTCTCAACTTTTCATCACTTCCAAACATCCTCACTCTTGATATCAGTCATAACTTCTTCAGTGGAACTATTCCTCCTCAAGTTGGGGTGTTGTCCAAACTCACTCATCTTGATTTAAGTCACAATCATCTCACTGGACCAATTCCTTCTCAAATAACTCGGTTGGTCAGTCTTCAAATTTTATACTTGGAAAAAAGTGTTTTCGATGGTTGTATTCCTGAAGAAATAGGTGCATTAAAGAATTTGAGAGAGATTTCCATTCGATTTGCCAATCTCACAGGGACAATCCCAAATTCAATTGGAAATCTATCCGTCTTGTCAAAAATTTATTTGAGGAATTGCAATCTAACAGGGTCTATTCCAAAATCTATAGGAAATTTGACCAGTCTGGTAATTCTAGATTTTTCGCAGAACAATCTTTATGGAAATATTCCTCACGAAATTGGGAATTTGCTAAACTTAAAGTTTTTGAGACTTGGACGTAATAACTTGCAAGGTTCTATTCCTCAAGAAATAGGTAATTTGATTAACCTTAGAGCTCTATATCTAGAAGGAAATAATTTATCTGGCAACATTCCTGTGGAAATTGGGAAGTTGGTAAACTTGATCAAGTTATGGCTTCTACAAAACAATCTTTCGGGTTCTATTCCTCAAGAAATTGGAATGATGACGAATTTGTTTCAACTTGATTTGTCCGATAACTTTTTGTCAGGTACAATGCCCCCTACAATTGGAAATCTCAGTAATTTATTCTTTATCTACTTGTATGACAACTATCTATCTGGATCCATTCCTACTGAAGTGGGAAAACTCCATTTTCTTCTCACCATCCAATTGCCAAACAATAATCTCTCTGGACCAATCCCATCTTCCATAGGTAATTTGGTCAATTTGGATTCTATTCGTCTTAATGGAAACAAACTCTCTGGAACAATTCCTTCCACTATTGGTAACTTAACAAAGCTCACCACACTTGTTTTATTCTCTAATAATTTAAGTGGGTACATTCCAATAGAAATGAATATGCTTACCAACCTGGAGACATTGCATTTATTTGACAATAATTTCATTGGTCATTTGCCTCACAATGTTTGCTATAGTGGAAAGTTGCTAAAGTTTACTGCTGGCAGCAACCATTTCACAGGTCCAGTACCCAGGAGTTTGAAGAATTGCTCCAGCCTCATAAGAGTTTCTGTTCCACAAAACCATTTGACAGGAAATCTAACAGAGGATTTTGGTGTATATCCACACTTGGATTACATAAACCTAAGTGAAAATAACTTTTATGGCCATATTTCTCCAAAATGGGGGAAATGCCATAATCTCACAGGCCTCAAAATCTCTAACAATAATTTATCAGGAAGCATTCCACCAGAATTAAGTCAGGCAACCAATTTACAAGTAATTCAATTGTCTTCAAATCACCTCACAGGAGACATTCCTGAACATTTAGGTAATTTGACCTATTTGTTCGAACTTTCTCTAAATAGTAATAATCTCTCGGGGAATGTTCCTATAAAAATAGCATCATTGCAAGATCTTGAGACCTTAGAACTGGGAGCAAATAGTTTTTCTGGCTTAATTCCAAATCAACTTGGTAATTTGGTCAAGTTATTACATTTGAATTTGAGCCAGAATAAATTTACGGGAAATATTCCATTCGAGTTAGGTAAATTAAAATATCTTCAAAGTCTTGATCTTAGCATGAACATTTTGAATGGAAATATACCACCATTGTTGGGAGATTTGAAAAGTTTAGAAGTATTAAATCTCTCACACAATCATCTTTCGGGTGATCTTTCCAGCCTTGATGAGATGATAGGCTTGATATCTATTGATATATCATACAACCAATTACAGGGTCCACTTCCGAACATTTTGGCCTTCCATATGGCTACAATTGAAGCATTGAGAAATAATAAAGGTTTGTGTGGTAATGTCTCAGGCTTGGAACCATGCCCAACATCACATCACAAATCTCAAAATCATAAGACTAACAAAGTCGTATTGGTATTTTTACCCATTGCTTTGGGAACTTCAATGCTAGCATTATTTCTCTTTGGAGTCTTATATCATCTTTGTCAAAGGTCAAAGACAAAAGAACATCAGATTGCAGAATCATCAGTCCAAAATCTTTTTGCGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATTATTGAAGCAACAGAAGAGTTTGACAACAAACATGTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCTGAATTGCAAACAGGTCAAATTGTTGCAGTTAAGAAACTCCATTCAGTACAAAATGGAGAAAGGTCAAATGATAAAGCTTTCAGAAGTGAAATTCAAGCTTTGACAGAGATTCGACATCGTAACATTGTGAGGTTATATGGGTATTGTTCTCATTCCCGATTCACATTTTTGGTGTATGAGTTCTTGGAAAGGGGAAGCATAGATAAGATTTTGAAAGACAATGAAGAGGCAACTGTGTTTAATTGGAAAAGAAGGATTGATTCCATTAAAGGTGTTGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCTCCAATTGTTCACCGAGATATCTCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACGGCCAAGCTTCTTAATCCTAATTCAGCCAATTGGTCCTCATTTGTGGGAACTTTTGGATATGCAGCTCCAGAACTTGCATACACGATGGAAGTGAATGAAAAATGTGATGTGTACAGCTTTGGGGTATTAGCACTGGAAATACTTTTTGGAAAGCACCCTGGAGATTTTGTAACTTCGTTAGTGTCTTCATCGAATGTGATGGAATCAACACTTGATATTCCTTCATTGATGAGTAAGCTAGATGAACGTCTCCCATATCCTGCAAAACCTACTGCTAAGGAGATAGTTTTGATTCTAAGGATGACAAATGCTTGCTTGAGTGAAAGCCCTAGCTCTCGCCCTACCATGGAGCAAGTGGTCAACGACTCTTCAATGCATAAATCATGA 3330 0.3676 MVFLFPMLQSIKLQSLCLFLLLMVISLHAPFSSSLSLQHTEANALLKWKASLHNPSQTLLSSWNNGNTSCNWLGIASDHSGSVSNINLTNIGLSGTLQTLNFSSLPNILTLDISHNFFSGTIPPQVGVLSKLTHLDLSHNHLTGPIPSQITRLVSLQILYLEKSVFDGCIPEEIGALKNLREISIRFANLTGTIPNSIGNLSVLSKIYLRNCNLTGSIPKSIGNLTSLVILDFSQNNLYGNIPHEIGNLLNLKFLRLGRNNLQGSIPQEIGNLINLRALYLEGNNLSGNIPVEIGKLVNLIKLWLLQNNLSGSIPQEIGMMTNLFQLDLSDNFLSGTMPPTIGNLSNLFFIYLYDNYLSGSIPTEVGKLHFLLTIQLPNNNLSGPIPSSIGNLVNLDSIRLNGNKLSGTIPSTIGNLTKLTTLVLFSNNLSGYIPIEMNMLTNLETLHLFDNNFIGHLPHNVCYSGKLLKFTAGSNHFTGPVPRSLKNCSSLIRVSVPQNHLTGNLTEDFGVYPHLDYINLSENNFYGHISPKWGKCHNLTGLKISNNNLSGSIPPELSQATNLQVIQLSSNHLTGDIPEHLGNLTYLFELSLNSNNLSGNVPIKIASLQDLETLELGANSFSGLIPNQLGNLVKLLHLNLSQNKFTGNIPFELGKLKYLQSLDLSMNILNGNIPPLLGDLKSLEVLNLSHNHLSGDLSSLDEMIGLISIDISYNQLQGPLPNILAFHMATIEALRNNKGLCGNVSGLEPCPTSHHKSQNHKTNKVVLVFLPIALGTSMLALFLFGVLYHLCQRSKTKEHQIAESSVQNLFAIWSFDGKMVYENIIEATEEFDNKHVIGVGGQGSVYKAELQTGQIVAVKKLHSVQNGERSNDKAFRSEIQALTEIRHRNIVRLYGYCSHSRFTFLVYEFLERGSIDKILKDNEEATVFNWKRRIDSIKGVANALCYMHHDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSANWSSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILFGKHPGDFVTSLVSSSNVMESTLDIPSLMSKLDERLPYPAKPTAKEIVLILRMTNACLSESPSSRPTMEQVVNDSSMHKS 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01377 1109 MobiDBLite consensus disorder prediction 1089 1109 - -
Viun5g01377 1109 SUPERFAMILY L domain-like 486 743 - -
Viun5g01377 1109 Gene3D Phosphorylase Kinase; domain 1 792 910 - -
Viun5g01377 1109 Pfam Leucine Rich Repeat 131 148 IPR001611 GO:0005515
Viun5g01377 1109 ProSitePatterns Tyrosine protein kinases specific active-site signature. 956 968 IPR008266 GO:0004672|GO:0006468
Viun5g01377 1109 FunFam Leucine-rich repeat receptor protein kinase MSP1 794 910 - -
Viun5g01377 1109 SUPERFAMILY Protein kinase-like (PK-like) 814 1103 IPR011009 -
Viun5g01377 1109 Gene3D Transferase(Phosphotransferase) domain 1 911 1109 - -
Viun5g01377 1109 SUPERFAMILY L domain-like 40 264 - -
Viun5g01377 1109 MobiDBLite consensus disorder prediction 1089 1103 - -
Viun5g01377 1109 SUPERFAMILY RNI-like 218 527 - -
Viun5g01377 1109 Gene3D Ribonuclease Inhibitor 299 465 IPR032675 -
Viun5g01377 1109 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Viun5g01377 1109 Pfam Protein kinase domain 833 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01377 1109 Gene3D Ribonuclease Inhibitor 187 293 IPR032675 -
Viun5g01377 1109 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 238 464 - -
Viun5g01377 1109 FunFam MDIS1-interacting receptor like kinase 2 911 1109 - -
Viun5g01377 1109 Pfam Leucine rich repeat 514 574 IPR001611 GO:0005515
Viun5g01377 1109 Gene3D Ribonuclease Inhibitor 608 752 IPR032675 -
Viun5g01377 1109 ProSiteProfiles Leucine-rich repeat profile. 683 705 IPR001611 GO:0005515
Viun5g01377 1109 FunFam Nuclear pore complex protein NUP107 38 196 - -
Viun5g01377 1109 ProSiteProfiles Protein kinase domain profile. 832 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01377 1109 SMART LRR_typ_2 393 417 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 273 297 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 225 249 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 633 657 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 129 153 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 681 708 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 441 465 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 321 345 IPR003591 -
Viun5g01377 1109 SMART LRR_typ_2 609 632 IPR003591 -
Viun5g01377 1109 FunFam Uncharacterized protein 465 760 - -
Viun5g01377 1109 PRINTS Leucine-rich repeat signature 132 145 - -
Viun5g01377 1109 PRINTS Leucine-rich repeat signature 681 694 - -
Viun5g01377 1109 Gene3D Ribonuclease Inhibitor 37 186 IPR032675 -
Viun5g01377 1109 Gene3D Ribonuclease Inhibitor 537 607 IPR032675 -
Viun5g01377 1109 Gene3D Ribonuclease Inhibitor 466 536 IPR032675 -
Viun5g01377 1109 PANTHER LEUCINE RICH REPEAT KINASE 2 390 1106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01377 Viun-Chr5 10418289 10421768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01377 20 1004 Receptor kinase-like Gene Family AT4G08850 43.744 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g01377 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01377 - - gmx:100811066 1479.54