Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01376 ATGGAGGGGAGAGATGAGGATGTGAGGGTAGGAGCCAACAGGTATGGGGAGAGGCAACAAATAGGAACAGGTGCACAGACACAAGATGGCAAAGACTACAGAGAGGCTCCTCCAGCTCCATTGTTTGAGCCTAGAGAGTTAACATCATGGTCTTTCTACAGAGCAGGAATAGCAGAATTTGTGGCCACATTCTTGTTTCTTTATGTCACAGTTTTGACTGTGATGGGTGTGGGAAAATCTCCCAACAAGTGTTCCACAGTTGGTGTTCAAGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCCCTTGTCTACTGCACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGTTGTTCTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATGATCATGCAGTGCTTAGGAGCTATCTGTGGGGCTGCTGTGGTCAAGGGATTCCAATCAAACCAATATGAGAGGCTTGGTGGTGGTGCCAACACTCTCAGTAAAGGATACTCTAAAGGTGATGGCCTTGGAGCAGAAATTGTAGGCACGTTTATTCTGGTTTACACTGTTTTCTCAGCCACAGATGCAAAACGAAATGCTAGAGACTCGCATGTTCCAATTTTGGCACCTTTGCCTATTGGTTTTGCGGTCTTTCTGGTGCACTTGGCTACAATTCCTATCACAGGGACCGGCATCAACCCTGCTAGAAGTTTAGGTGCTGCTCTTATTTACAACAAGGACCAAGCTTGGGATAATCACTGGATCTTCTGGGTTGGGCCTTTTGTTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTGAGGGCCATTCCTTTTAAATCAAAATGA 864 0.4653 MEGRDEDVRVGANRYGERQQIGTGAQTQDGKDYREAPPAPLFEPRELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVGKSPNKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYMIMQCLGAICGAAVVKGFQSNQYERLGGGANTLSKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDNHWIFWVGPFVGAALAALYHQIVLRAIPFKSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01376 287 FunFam Probable aquaporin PIP1-2 39 287 - -
Viun5g01376 287 NCBIfam MIP family channel protein 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Viun5g01376 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 283 IPR034294 -
Viun5g01376 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Viun5g01376 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g01376 287 SUPERFAMILY Aquaporin-like 45 279 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01376 Viun-Chr5 10404326 10405961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01376 1 287 Major Intrinsic Protein MIP AT3G61430 81.533 4.76e-173 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01376 K09872 - gmx:100809467 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01376 5 10404326 10405961 Viun10g01121 10 19884410 19888682 PCT