Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01362 ATGTTTTGTAATTGTTTTGGTGCTTTGAATTGTTTTGGAAGGAGGGATGATCCAGCGGACCAGCCACATGAACAAGCAACAAACGATTTTCACCCATCGAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCCACAAGGGAGTTTTAAGGGATGGTACTCATGTTGCCATCAAGTCTCTTTCAGTTGAGTCTAAACAAGGGGCTCGTGAATTTATGACAGAAATTGATTTGATATCAAATATTCGACATCCAAATCTTGTGGAACTGATTGGCTGCTGCATTGAGGGTAGTAATCGAATACTGGTTTATGAGTTTATGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAGAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTACTTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGTAACATATTGTTGGATGGGAATTTTAATCCGAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCGGACAATGTCACCCATGTTAGTACTAGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACATTTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCAGCATTTGATGAGGACTATCTGGTTTTAGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAATAGGCTTCTAGACCTTGTTGATTCAGAATTAAGTGAGTATGATGAGAGTGAGGTGTATCGGTTCCTTGTGGTGGCTCTGTTTTGCACCCAATCAGCTTCTCAGCATAGACCAAGCATGAAACAAGTATTGGAAATGCTTTCCAGAGAAGTTCATCTTAACGAGAAGGCTTTGACTGAGCCTGGAATCTACAAATGGCAGAGCACTGGAAAAAGGGGTGGTTCTTTGAATGAGACATCATCTCAGGCAATCAAGCACAGAAAAACTGAAAATCCACATGAAGCAGCTTCAGCTCACTTCAGTGGTTCAGATATTGTGACAGAGATGCTTCCAAGATGA 1098 0.4162 MFCNCFGALNCFGRRDDPADQPHEQATNDFHPSSKIGGGGYGVVHKGVLRDGTHVAIKSLSVESKQGAREFMTEIDLISNIRHPNLVELIGCCIEGSNRILVYEFMENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLLFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADIYSFGILMLEIISGKSSSIAAFDEDYLVLVEWAWKLKEENRLLDLVDSELSEYDESEVYRFLVVALFCTQSASQHRPSMKQVLEMLSREVHLNEKALTEPGIYKWQSTGKRGGSLNETSSQAIKHRKTENPHEAASAHFSGSDIVTEMLPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01362 365 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Viun5g01362 365 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 20 105 - -
Viun5g01362 365 SMART serkin_6 30 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01362 365 Pfam Protein tyrosine and serine/threonine kinase 33 300 IPR001245 GO:0004672|GO:0006468
Viun5g01362 365 FunFam Putative LRR receptor-like serine/threonine-protein kinase 106 312 - -
Viun5g01362 365 Gene3D Transferase(Phosphotransferase) domain 1 106 315 - -
Viun5g01362 365 SUPERFAMILY Protein kinase-like (PK-like) 21 300 IPR011009 -
Viun5g01362 365 Gene3D Phosphorylase Kinase; domain 1 22 105 - -
Viun5g01362 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Viun5g01362 365 CDD STKc_IRAK 36 302 - -
Viun5g01362 365 MobiDBLite consensus disorder prediction 322 365 - -
Viun5g01362 365 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 24 336 - -
Viun5g01362 365 ProSiteProfiles Protein kinase domain profile. 30 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01362 Viun-Chr5 10291459 10295474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01362 24 315 Receptor kinase-like Gene Family AT1G56120 53.082 3.65e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g01362 PK_Tyr_Ser-Thr 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01362 - - gmx:100816683 643.654