Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01356 ATGGGGTCAACCAGTTTTCTATGGAACTGTACTAAGAAGTTTGTCACAGCTGCTGTCATCACTGTGACTGTGACTGATCGTTTTGGGACAGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACATTAAATCCTAAATCGGGTTCTCTGATGGATGACTATGTTTTTGTTGAGAAATTTTGCCTTTTGAGGTACGGATTTTCAAATGGCGATGTGGTGGTCTTCCGGTCCCCAACGAATCACAAGGAGACACACATAAAAAGAATAGCTGCATTACCTGGTGAATGGTATGGCACTAAACATAACAACGATGTGATTCAGATCCCGTTAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGCTCTAATTCGAGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGGTGTCGAGAGTACTCCACCACAAAGATTATCTTCTGTAATAGAATAA 504 0.4345 MGSTSFLWNCTKKFVTAAVITVTVTDRFGTVVPVRGGSMSPTLNPKSGSLMDDYVFVEKFCLLRYGFSNGDVVVFRSPTNHKETHIKRIAALPGEWYGTKHNNDVIQIPLGHCWVEGDNSASSIDSKSFGPIPLALIRGRVTHVVWPPQRIGGVESTPPQRLSSVIE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01356 167 SUPERFAMILY LexA/Signal peptidase 30 154 IPR036286 -
Viun5g01356 167 Gene3D Umud Fragment, subunit A 26 157 - -
Viun5g01356 167 FunFam Mitochondrial inner membrane protease subunit 25 159 - -
Viun5g01356 167 CDD S26_SPase_I 31 141 IPR019533 GO:0004252|GO:0006465
Viun5g01356 167 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 160 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Viun5g01356 167 Pfam Signal peptidase, peptidase S26 9 95 IPR019533 GO:0004252|GO:0006465
Viun5g01356 167 Pfam Signal peptidase, peptidase S26 103 146 IPR019533 GO:0004252|GO:0006465
Viun5g01356 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun5g01356 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun5g01356 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01356 Viun-Chr5 10263310 10265887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01356 39 158 MADS-box Gene Family AT1G29960 36.508 6.21e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01356 K09648 - gmx:100527429 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01356 5 10263310 10265887 Viun5g01356 5 10263310 10265887 ECH