Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01355 ATGGGGTTTGGTCTGAAAAGGAGGAAGAAGAGAGGAGAAGCAGAGGAAGAAGAAAGGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGATATCCAGTTCGCCAACACACTAGCTTCTGAGTATCGAAGTGGAGGTGCCAGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCACAATTCTTCCTTTTCCTTGTTCAATGGACTGACTGTCACCTTGCTGGAGCCTTAGGACTGCTCAGAATTCTAATATACAAGGCTTATGAAGATGGAAAGACAACCATATCCATTTACGAAAGAAAAGCCAGTCTAAAGGAATTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACCGAAAACAAAAACATTTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAACTTTCTGAAGCTGACATCGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTATGGAATGCTACCAGGACTGGCATGAAAGATCTCAATCTTGTCCTTTTTGTCGAGACAGTCTCAAAAGAGTAAACCCTGATGATCTTTGGATCTACATTAGCAGCAATGAGATCAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGATTGGTCATGTACATAGAAAGTTTGCCTCTAATTGCCAGATCCTACATTCACCATCTCATATCATCACCGCTAGTGATTGCCAATTAG 789 0.4106 MGFGLKRRKKRGEAEEEERMRKSFKDSLKALEADIQFANTLASEYRSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATKYKLKDLTSKGKLSEADIEREEECGICLEMNSMVVLPNCYHSMCMECYQDWHERSQSCPFCRDSLKRVNPDDLWIYISSNEINDLASINKENLKRLVMYIESLPLIARSYIHHLISSPLVIAN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01355 262 SMART ring_2 163 200 IPR001841 -
Viun5g01355 262 PANTHER RING FINGER PROTEIN 41, 151 22 247 - -
Viun5g01355 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 210 IPR013083 -
Viun5g01355 262 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Viun5g01355 262 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Viun5g01355 262 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Viun5g01355 262 SUPERFAMILY RING/U-box 153 206 - -
Viun5g01355 262 FunFam RING/U-box superfamily protein 144 210 - -
Viun5g01355 262 Coils Coil 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01355 Viun-Chr5 10258122 10261657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01355 107 212 C3H Transcription Factor Family AT5G01960 31.532 1.35e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01355 K25840 - gmx:100814293 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01355 5 10258122 10261657 Viun5g01355 5 10258122 10261657 ECH