Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01350 ATGGGTTCTCACCAACATGAACCATGGCTACTGGAGAACGGGAACCCGAAGGTTTTGACCAGGGAAATGAGACATGGCCGCACTGCACACAGCAAGTCCTCTAACTCACTTCGCAAGAAGTCTGATCGAACTCTTGTTTCCAAGGTTCCCTGTGCCACTCTCCGAAACGTGCTTCTCAACTTGCAAGAAGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCTGCTGCCATTGTTGCTGAGTACTGTGGCTTTGGAAGACCTTGGGTGTTCGTGTTGAGCTTGCTTGGACTTACCCCACTTGCTGAACGAGTGAGCTTCATCACGGAACAAGTTGCCTTCTACACTGGTCCTACAGTTGGAGGACTTCTGAACGCGACATGTGGGAATGTTACGGAGCTCATAATAGCAATATTTGCCCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTATTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGAACCTCTCTATTATGTGGTGGCATTGCAAACGTTAGATTGGAACAAAAATATGACAGAAGACAAGGAGATGTGAACTCACTTATGCTGTTGTTGGCACTGTTGTGCTACTTACTTCCAATGCTGTTCAAATATAGCGCTGCCTCAGCTGCTCTCACTGTTGACCCTTCACTCCACTTGTCTAGAGCTTCTAGCATTGTGATGCTGATTGCATATGTTGTTTACATCATCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCTGAAGATGAGGATGAAGATGACAACAATGGCTCAGATGATGAACAAGCTGTGATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTTCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCAGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTGTGTGTGATCGTTGCTTGGACAATGGGTATCAAAATGGATTTGAACTTCAACATCCTAGAGACAGGTTCAGTTGCTTTGGCAATAATAGTCACAAGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTATTCTGCTGCTGTGCTACATAGTTATTGGAGCTTGCTTCTTCGTAGAAAGAACACCTTTGAACCAAGGTGATGTTACAAACGTCATTCCTAAACCAGCCATTAATGCTGTTTTAAGTGCTTAA 1350 0.4415 MGSHQHEPWLLENGNPKVLTREMRHGRTAHSKSSNSLRKKSDRTLVSKVPCATLRNVLLNLQEVILGTKLSILIPAIPAAIVAEYCGFGRPWVFVLSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANVRLEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYVVYIIFQLWTHRQLFEAEDEDEDDNNGSDDEQAVIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWTMGIKMDLNFNILETGSVALAIIVTSFTLQDGTSHYMKGLILLLCYIVIGACFFVERTPLNQGDVTNVIPKPAINAVLSA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01350 449 FunFam Vacuolar cation/proton exchanger 268 424 - -
Viun5g01350 449 Gene3D - 121 262 IPR044880 -
Viun5g01350 449 Gene3D - 266 423 IPR044880 -
Viun5g01350 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 427 IPR004713 GO:0006812|GO:0008324|GO:0016020
Viun5g01350 449 FunFam Vacuolar cation/proton exchanger 121 265 - -
Viun5g01350 449 NCBIfam calcium/proton exchanger 74 423 IPR004798 GO:0006816|GO:0015369
Viun5g01350 449 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Viun5g01350 449 Pfam Sodium/calcium exchanger protein 281 418 IPR004837 GO:0016020|GO:0055085
Viun5g01350 449 NCBIfam calcium/proton exchanger 56 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01350 Viun-Chr5 10183655 10187240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01350 7 431 Antiporters AT2G38170 68.822 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01350 K07300 - gmx:100816231 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01350 5 10183655 10187240 Viun5g01350 5 10183655 10187240 ECH
Viun5g01350 5 10183655 10187240 Viun10g01179 10 21675136 21679938 PCT