Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01337 ATGGGGGTGGACTACTACAAGATTCTTCAAGTAGATAGGAGCGCCAAAGATGAGGATATTAAGAAAGCATATCGAAGCTTGGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGACGCTGAAGCTAAATTCAAGCAAATCTCGGAAGCATATGATGTCTTGAGTGATCCACAGAAGCGAGCCGTGTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCGCCGGGCGGCGGTGGTTTTCCTGGTGGCAGCGACGGTGGGCCGACAACATTCCGGTTCAATCCCAGAAATGCTGATGATATATTTTCTGAGTTTTTCGGGTTTACGAGCCCCCTTGGTCGTGGTGGAATGGGGGACATGGGTGGCCGAGGTGGATTCTCCAGGGGTGGCCCGTTTGGTGAAGATATTTTTGCTCAATTTCGGAATGCAGCTGGTGAGGGCTCTGGCCTTGTGCCTAGAAAAGGGGCACCCATTGAGAGAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAACGATTCCAGTGGGAGGCCCTCGACAGTAGAGGAAATTCTGACAATTGAGATAAAGCCAGGTTGGAAGAAAGGAACAAAAATAACATTTCCCGAAAAGGGAAATGAACAAAGAGGAGTTATCCCTTCAGACCTTGTGTTCATAATCGATGAGAAGCCTCATGGTATGTTCAAGAGGGATGGCAATGATCTTGTTCTTACCCAGAAAATCTCTCTTGTGGAAGCCTTAACAGGTTACACAGCTCAGGTGACAACACTTGATGGTCGGAATCTGACAATTCCGGTTACCAACACGATTAGCCCGACATATGAAGAAGTTGTGAAAGGTGAGGGCATGCCGATTCCGAAAGAACCTTCGAGGAAGGGAAACTTGAGAATCAAGTTCAATATCAAGTTTCCTTCGAGGCTTACATCGGAACAGAAAAGTGGCCTGAAACGATTTTTGACATCGCCTTAA 1017 0.4651 MGVDYYKILQVDRSAKDEDIKKAYRSLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGVPPGGGGFPGGSDGGPTTFRFNPRNADDIFSEFFGFTSPLGRGGMGDMGGRGGFSRGGPFGEDIFAQFRNAAGEGSGLVPRKGAPIERTLHCSLEDLYKGTTKKMKISRDVNDSSGRPSTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHGMFKRDGNDLVLTQKISLVEALTGYTAQVTTLDGRNLTIPVTNTISPTYEEVVKGEGMPIPKEPSRKGNLRIKFNIKFPSRLTSEQKSGLKRFLTSP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01337 338 FunFam Dnaj homolog subfamily b member 158 239 - -
Viun5g01337 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Viun5g01337 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Viun5g01337 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Viun5g01337 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Viun5g01337 338 CDD DnaJ 4 59 IPR001623 -
Viun5g01337 338 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Viun5g01337 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 329 IPR008971 GO:0006457|GO:0051082
Viun5g01337 338 CDD DnaJ_C 160 323 - -
Viun5g01337 338 FunFam DnaJ subfamily B member 13 241 321 - -
Viun5g01337 338 Gene3D - 161 239 - -
Viun5g01337 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Viun5g01337 338 FunFam DnaJ subfamily B member 13 3 121 - -
Viun5g01337 338 Pfam DnaJ domain 4 67 IPR001623 -
Viun5g01337 338 SUPERFAMILY Chaperone J-domain 3 122 IPR036869 -
Viun5g01337 338 Gene3D - 241 321 - -
Viun5g01337 338 Gene3D DnaJ domain 3 120 IPR036869 -
Viun5g01337 338 SMART dnaj_3 3 62 IPR001623 -
Viun5g01337 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Viun5g01337 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Viun5g01337 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 241 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01337 Viun-Chr5 9975075 9977612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01337 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 1.08e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01337 K09510 - gmx:100818358 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01337 5 9975075 9977612 Viun10g01203 10 22073664 22077635 PCT