Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01336 ATGGACATGGCTTCCAGTCCGCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCCAGAAGAACCGCTGTTATTCGCGCTCTCACTCATGACGTTGATGAATTTTACGGACTCTGCGATCCAGATAAGGATAACTTGTGCCTGTATGGACACCCGAATGAAGCCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGAATGAACCGGAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGACTCGTGGTTGGTTTCTGTGGCCTTTTACCTTGGGGCTCGTCTTAACCGCAATGAAAGGAAACGTCTGTTTAGTTTGATCAATGATCTTCCATCCGTTTTTGAAGTTGTGACTGAAAGAAAACCAATTAAGGACAAGCCCACTGTCGATAGCGGAAGCAAGTCTCGGGGAAGCACCAAGAGAGCCAATGATGGACAAGTTAAAAGCAACCCGAAGTTTGCTGCGGATGAGGGTTACGAGGAGGATGAAGACGAGCACAACGAAACACTGTGTGGAAGCTGTGGTGGAAATTACAACGCGGATGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAGGTCACCCCTGCAAAGGCTGAGGGCATAAAGCAGTATAAATGTCCATCATGCAGCCTGAGGCGTGGCAGGCCCTAG 723 0.4965 MDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTERKPIKDKPTVDSGSKSRGSTKRANDGQVKSNPKFAADEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKVTPAKAEGIKQYKCPSCSLRRGRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01336 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 234 IPR013083 -
Viun5g01336 240 MobiDBLite consensus disorder prediction 148 162 - -
Viun5g01336 240 MobiDBLite consensus disorder prediction 140 176 - -
Viun5g01336 240 FunFam PHD finger alfin-like protein 179 235 - -
Viun5g01336 240 PANTHER CPG BINDING PROTEIN 6 239 IPR045104 GO:0006355|GO:0042393
Viun5g01336 240 Pfam PHD-finger 187 234 IPR019787 -
Viun5g01336 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Viun5g01336 240 SMART PHD_3 186 234 IPR001965 -
Viun5g01336 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Viun5g01336 240 CDD PHD_AL_plant 186 236 IPR044104 -
Viun5g01336 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Viun5g01336 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01336 Viun-Chr5 9967929 9971249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01336 4 239 Alfin-like Transcription Factor Family AT5G05610 74.262 2.24e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Viun5g01336 Alfin 1.4e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01336 K26274 - gmx:100782478 473.781