Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01335 ATGGGTTCCTCTCGTTCACGTGCCTCTGCCACTGCCAAAGAACGCCTACGTTGGACACAAGAACTCCATGATCGCTTTGTGGTGGCTGTAAATAGACTAGGTGGCCCTGATCGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGGCTATGGGTATTTCAGAGCTAAACATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAATCCCCCACAAGAGGAAAACTTGAGAAGAGAAGCATATCAGATATACTTCCAAATTTTAGCTCTATATCTGCTCTTCAACTAAAGGAACTGCTTCAGATGCAATCAGAGGTGCAAAATCGCTTGAGTGAAAAAACACAGGTTCAGAGAAGTATGAAGGCAAAAGGTGAAGCACAAGGAAGGTACATGGAGAGACTTGGACAAAGCAGTGATAACCAAACAATAACTGGAAAAGCATGCAAGCCTTTTGCTTCTTCTGCAACTGCACCTCTGCCTTCTCTTTCTCAGGAATCTGAATCATTGAAATCACAAAGTGAGAAAGAAAATGAAACAGTGAAAAAGCAAAGGATTTCAGAAGAGGGTGTTTTTCCGACAAGTTTTGAAGATGCACCATCCACCCCACCACAATTCTACAACCAAACATGGAATCTTCCTTGGAGTCAGCTTGCAGCAGCATGCCAATCAACTTTGGATCCCACTTTCTTATTTTGA 717 0.4226 MGSSRSRASATAKERLRWTQELHDRFVVAVNRLGGPDRATPKGILKGMKAMGISELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSISDILPNFSSISALQLKELLQMQSEVQNRLSEKTQVQRSMKAKGEAQGRYMERLGQSSDNQTITGKACKPFASSATAPLPSLSQESESLKSQSEKENETVKKQRISEEGVFPTSFEDAPSTPPQFYNQTWNLPWSQLAAACQSTLDPTFLF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01335 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 188 IPR044848 GO:0003700
Viun5g01335 238 MobiDBLite consensus disorder prediction 176 192 - -
Viun5g01335 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Viun5g01335 238 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Viun5g01335 238 MobiDBLite consensus disorder prediction 124 209 - -
Viun5g01335 238 MobiDBLite consensus disorder prediction 140 156 - -
Viun5g01335 238 Gene3D - 12 73 - -
Viun5g01335 238 Pfam MYB-CC type transfactor, LHEQLE motif 102 141 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01335 Viun-Chr5 9963291 9966972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01335 3 154 G2-like Transcription Factor Family AT4G28610 42.405 4.67e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun5g01335 Myb_CC_LHEQLE 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01335 - - psat:127127459 278.1