Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01298 ATGACTACTCCTTTGGCTTACCAAGAACACCTTCCTGCAGCACCCGAATGGCTGAACAAAGGGGACAACGCGTGGCAGTTAACAGCGGCAACTCTTGTTGGTCTTCAAAGCATGCCGGGTCTTGTGATTCTGTACGCCAGCATAGTGAAGAAAAAATGGGCTGTGAACTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTCTCCTATGTTGGGTGCTGGTGTGTTACCGAATGGCCTTTGGGGAGGAGCTTTTGCCCTTCTGGGGTAAGGGTGCCCCTGCACTAGGTCAAAAGTTCCTCACAAAACGAGCCATAGTTATGGAAACCACTCACCGCTTTGATAATGGGACTGTTGAGACCCCTGCTGAAGAACCCCTTTACCCCATGGCTTCCCTTGTTTATTTCCAATTCACTTTTGCTGCTATTACCCTCATCTTGTTGGCTGGTTCTGTTCTTGGCCGTATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTAATCTTTTCTTACACTGTTGGGGCTTTCAGTCTCTGGGGTGGTGGCTTTCTCTACCAATGGGGTGTCATAGATTACTCTGGTGGCTATGTCATTCACCTTTCCTCTGGAATCTCTGGTTTAACCGCTGCTTATTGGGTTGGACCAAGGTTGAAGAGTGACAGAGAGAGGTTTCCACCGAACAATGTGCTGCTGATGCTTGCAGGTGCAGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCTGCAAATGTTGCATCTTCAATTGCTGTGCTCAACACAAACATCAGTGCAGCCACAAGTCTCCTGGTATGGACAACCTTGGATGTCATTGTGTTCGGGAAACCTTCTGTGATCGGAGCTGTGCAGGGCATGATGACTGGTCTTGCATGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCTGCTATAGTGATGGGAATATTATCTGGGAGCATTCCATGGGTCACCATGATGATTTTGCACAAAAAGTCAACCTTGTTGCAAAAGGTGGATGACACTCTTGGTGTGTTTCACACGCATGCTGTGGCTGGGCTTTTGGGTGGTCTCCTCACAGGTCTATTTGCAGAACCCTCTCTGTGTAGGTTACTGTTGCCTGTTACGAACTCAAGGGGAGCATTCTATGGAGGAGAAGGTGGCATGCAGTTCGTGAAGCAATTGGTGGCAGCGATGTTTGTGATATCATGGAACTTGGTGTCGACGACCGTCATTCTCCTTTTCATACAGTTGTTCATACCGTTGAGGATGCCAGACGAGCAGCTGGAGATCGGCGACGACGCCGTCCACGGCGAGGAAGCGTATGCCCTGTGGGGTGACGGAGAAAGATTTGACCCAACCAGACATGGCTTGCACACTTCCAACACTGCTGTCTCACCTTATGTCACTGGTGCAAGAGGGGTCACTATAAACTTGTAG 1458 0.4973 MTTPLAYQEHLPAAPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLVCYRMAFGEELLPFWGKGAPALGQKFLTKRAIVMETTHRFDNGTVETPAEEPLYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGISGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVASSIAVLNTNISAATSLLVWTTLDVIVFGKPSVIGAVQGMMTGLACITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSTLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPSLCRLLLPVTNSRGAFYGGEGGMQFVKQLVAAMFVISWNLVSTTVILLFIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGERFDPTRHGLHTSNTAVSPYVTGARGVTINL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01298 485 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Viun5g01298 485 PANTHER AMMONIUM TRANSPORTER MEP2 10 459 IPR001905 GO:0008519|GO:0016020|GO:0072488
Viun5g01298 485 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Viun5g01298 485 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
Viun5g01298 485 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Viun5g01298 485 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Viun5g01298 485 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Viun5g01298 485 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Viun5g01298 485 Gene3D Ammonium transporter AmtB like domains 3 451 IPR029020 -
Viun5g01298 485 SUPERFAMILY Ammonium transporter 17 430 - -
Viun5g01298 485 FunFam Ammonium transporter 6 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01298 Viun-Chr5 9465661 9469733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01298 130 485 Inorganic Solute Cotransporters AT2G38290 77.994 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01298 K03320 - gmx:100790119 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01298 5 9465661 9469733 Viun5g01298 5 9465661 9469733 ECH