Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01297 ATGAGGATGGAAGAAGAGAGACACGTCTCAGAATGTTCCAAGACAAGTCCTTCCAACGAAGAAGGGTTTGAAGAAAGTGAAGAGGAGAATGAAGGTGAGAGTAAGCAGAACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAATCAACAGTGAGACCTTATGTTAGATCCAAATTGCCTCGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGATTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTGGAGACAAATCAAGTATTGGGTGATCCTAGGCTCCTTGTAGAAACTGGAGACAGAAACGTTTACAATCTCAGCCAAATTCCCATGCTTCAAGGCTACAATATTCCAAGCCAAACAAGATATGGATATGGGGATGCTTCTCTTGCTATCTATGAAAACATGGTGAAAACCTGCATGAATAGGAGTTCAGCAGATGAATCTGGACCAGAATTTTGTGGCACCAGATTCACTGAGAGAACTCATGGAACCAATAGTAACATCAATTGGAGTCATAATCTGCCACAAGTTGATTGTTCAAGTTTTAACGAACACGAACCAAAACATAAGTTCTTGTTTGGTGGCAATGAATCCTTATGCAGACCACATCAAATGCAGCCAAGTGCACAAGAACTCATGCCAAACAATGACATGGCTTCAAATCTGGTGGAACTAAAGAGCTTAAAAAGGAAGGTTTCAGATACTGACATTGATTTGAATCTGTCACTTAAATTAAGTTCAAGGGTTGAGAAGCATGGAAGCATGGTGGAGCATGAAGTTGATAGCAACCTATCACTGTCTTTGTGTTCTCAATCCTCTTCCTCTTGGTTGAGAAAATCATCACAAGATCATTCTAAGGAGCAAGGGGAAAGAACCAGAACATTGGATCTCACTATATGA 1020 0.4118 MRMEEERHVSECSKTSPSNEEGFEESEEENEGESKQNNNGGSSSNSTVEENEKKSTVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVETNQVLGDPRLLVETGDRNVYNLSQIPMLQGYNIPSQTRYGYGDASLAIYENMVKTCMNRSSADESGPEFCGTRFTERTHGTNSNINWSHNLPQVDCSSFNEHEPKHKFLFGGNESLCRPHQMQPSAQELMPNNDMASNLVELKSLKRKVSDTDIDLNLSLKLSSRVEKHGSMVEHEVDSNLSLSLCSQSSSSWLRKSSQDHSKEQGERTRTLDLTI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01297 339 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g01297 339 MobiDBLite consensus disorder prediction 35 50 - -
Viun5g01297 339 Pfam Myb-like DNA-binding domain 68 118 IPR001005 -
Viun5g01297 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Viun5g01297 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 241 IPR046955 GO:0003700
Viun5g01297 339 MobiDBLite consensus disorder prediction 317 339 - -
Viun5g01297 339 MobiDBLite consensus disorder prediction 1 60 - -
Viun5g01297 339 FunFam Myb family transcription factor 64 122 - -
Viun5g01297 339 Gene3D - 65 122 - -
Viun5g01297 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677
Viun5g01297 339 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01297 Viun-Chr5 9453128 9455169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01297 57 149 G2-like Transcription Factor Family AT2G42660 56.881 1.38e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun5g01297 Myb_DNA-binding 9.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01297 - - gmx:102662997 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01297 5 9453128 9455169 Viun5g01297 5 9453128 9455169 ECH