Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01293 ATGATGCAGCAAGAGGATATGCAGTCACCATGGTCATTCTTTGAAGACATGAACTCAACTTTTGAATCAGGTGTTGAGTCCTATGGCTTCACTGTGTATGACCATGTTGGTGATTGTGGATCCTATGGCTTCACTGTGGATGATTGTGGAGCCTATGGTTTCACTGTGGATGACCATGTTGGTGACTGTGGACTCAATACACTGTTGAGCACTCTAGAGGATTATTCCACTTCTGAAATTTGTTCCATACCCTTTTCTTCCAACCCTTTATTTTTTTCCAATGATCATGTTCACACCCAATACCCAATCAATGAAGAAACCGGGCAACTTCCATCACTCATGGAATTGGATGATTTTGATTCCATTCTGGATACTGAAATTGTTAGTATTGAAGGTCATGGATACCTAAGGGAGAGTGAAGGGAGCTTCTTTCCCCCACAGAATTTTTCAAGTGAGGTGGAAAATGCTTGGAGTCCTACCCCTTCTGTGAGGTCAGAGTTGTCCACAAATCAAGCATCACTATTGACTTTACCCCACCAAAACATGGAAATTGAAAACCAAGTGAGTCTTCCACACTTGCTAGAGGCACATGGAGAGGCCTTGGAGCAAGGACAAAAATCACTAGCAGAAGTGATTTTGAGGTGCATGAGCCAGAAAGCTAGTCCACTAGGTGAGTCTCTAGAGCGCCTTGTGTTCTACTTGTCTCAGAGCATGACCAATCATGGAGACTATCTCAAAGGTGAGGCCTTCAAGAACTTTGAGGCTGCTCTGAGGGCACTCTATCAAGGTCTCCCAATTGGGAAAGTTGCTCACTTTGCAGCTGTTTCTGCAATTCTTGAAGCCATGCCACCAGATTGTAATAGTGTACACATAGTGGACTCTTGTGTTGGACATGGGTTTCAATGGGTTCCAATGATTGAGGCTATTGCACACATGAACAAAACAGTGAAACTGACATCAATTAAATGGGATGGTGATGGTGAGGGTCTTGAGTGTTTTTCTAGTTTATCAAATTTTGAGGAAACTAGAAAGCAGCTCTGTGAGCATGCCAAATCCTGTGGTTTGAAGTTGAAGGTAGAGGAGAAAGGAGTGAAGGAACTTGTTGCTGAGATTAAGAAAATGAACAAAAGGGGTGGGAGAGGTGAGTTTTTGGCCTTCAATTCCATGATTGGTCTTCCACACATGGGAAGAGAAAGTAGCAGAAGACAAGCCTTGGAGTTTCTAAGGGTAGCTGAAGATTTGATCAACACCTCTGGCAATAGGGGGATTATAACTTTTGGGGATGGAAGTGCTTATGAGAGAGTGAAAAACAGCTTGAATTTCAGGTCATTCTTTAAAGCACATTTGGAGCATTACCAAACCTTGTTAGAAGCAATTGAATCACATTTCCCAACTCGTTTCTCAGAAGCAAGAATCGCCATGGAGCAACTGTTTTTGCAACCTTGTATTTCCTCTATTGATTGGTTACAAACATGGGAAGAGATGCACAGTGATGGCCCTGTTGAGGCTGAAATTAGCTTTAAGGGTTGCCAATTAAGCAAAAATATTTTGATGGAAATCAGAGAAGTGTTGAGAGGAAGTGAAGGCTCATATCAAGCAAGGATTGAAGGACAAAATGACAATGAACTAGTTTTGGAGTACAAAGGATCTCAGCTCTTAAGATTTTCAACTTGGAAAAACTAA 1683 0.4201 MMQQEDMQSPWSFFEDMNSTFESGVESYGFTVYDHVGDCGSYGFTVDDCGAYGFTVDDHVGDCGLNTLLSTLEDYSTSEICSIPFSSNPLFFSNDHVHTQYPINEETGQLPSLMELDDFDSILDTEIVSIEGHGYLRESEGSFFPPQNFSSEVENAWSPTPSVRSELSTNQASLLTLPHQNMEIENQVSLPHLLEAHGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQSMTNHGDYLKGEAFKNFEAALRALYQGLPIGKVAHFAAVSAILEAMPPDCNSVHIVDSCVGHGFQWVPMIEAIAHMNKTVKLTSIKWDGDGEGLECFSSLSNFEETRKQLCEHAKSCGLKLKVEEKGVKELVAEIKKMNKRGGRGEFLAFNSMIGLPHMGRESSRRQALEFLRVAEDLINTSGNRGIITFGDGSAYERVKNSLNFRSFFKAHLEHYQTLLEAIESHFPTRFSEARIAMEQLFLQPCISSIDWLQTWEEMHSDGPVEAEISFKGCQLSKNILMEIREVLRGSEGSYQARIEGQNDNELVLEYKGSQLLRFSTWKN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01293 560 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 532 IPR005202 -
Viun5g01293 560 ProSiteProfiles GRAS family profile. 181 559 IPR005202 -
Viun5g01293 560 Pfam GRAS domain family 192 559 IPR005202 -
Viun5g01293 560 Coils Coil 357 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01293 Viun-Chr5 9387883 9390238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01293 209 476 GRAS Transcription Factor Family AT5G66770 25.993 8.73e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g01293 GRAS 9e-35 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01293 - - gmx:100792407 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01293 5 9387883 9390238 Viun5g01293 5 9387883 9390238 ECH