Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01273 ATGAAGACCAATACTAACGTTTCTGGGGAGAGGAAATCGCGTAAGAGGCGCAGTAGTGGAACTGATTCTGTGGAGAACACTCTTGAAAAGTGGAAAGAGTATAACAGGAAGCAACAACTTGGGTCAAGAGAGAATGGGGTGGAAGTGATTCAGAAAGCTCCGGCAAAAGGGTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAAAGAATTTGGGGGAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGAAAGCTTGTGGGTGAAAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCTGCGAAGGCCATGTATGGCTCCTCTGCGCGTTTGAATTTTCCCGACCCTTCTGTGGAGCCAGTACACTCTAATGGATCATCATCATCATCATCATCATCTAGTGGATGTGATAAAAAATCACCGAGTGGTTCTTCAGAGAATGACGGTGATGTTGAAAAAGCTGGGTCAGAAAGGAACCTTCATCAGCCTCATGAAGAGAAACCAAGGTTTTCTGAGGTTGGTGTTTTTGAGGTAACACAAGAGAAACTGGTTCTCTCTGGAGGTTGTGTAGCTGATGACTCAATAGAGGAGTTGAAGGAAATGACAAGTGGCTTTGAACAATGTCAAACAAGTGAGGAATGTAAGGCAATAACTTTGAAGAATATTAAGTCTGAAATACCTGAAGAAAGTGAAGGGATAGAGAGAGAATTGGAGAGGGTTTTGAAAAATTCTGGCATAGGTGAAGAGGGAAATAATCTCTTGCAGAATGAGCCTTTGGACATAGCCATGAATACAGGAGCTAACTACTGCAGCTCTTCTGATGCTGCTGAACATGACATTGTGGAGAAGAGTGAAGAAACAAGAGGAGAATCAGTTGAAGCTTTGAAACCATGTGAGTTAAGCTGCAGCAGCCATTGCCTTGGATGTATGCATAACATGCTGCCAGATAGCAATTCAAAACCACATTCTGAGCACTTTAGTAACAACCAAACTGAGGCATCCATAGCAAGAAAACATACCGAGGAAGTAATTTCTGAAATCCTGGGCCTGTGTCACAGCAAGAGCTTGAAGATTAGTCATGATCAGTCACCACATGAGCATTATAGAACTGAACATTTTGATGAGATGAGAACTCAGCTTAAGTGTTTCGAATGCAAGCTGAGAGCACATTCTATTCATTACAAAACTCAGGCATCCATGGTTGGGGATTCCAATTATCCTTCAATGCAAGGAATTCATATGTTTGGTGGTGGCACTGTTGGACCAATTGAAAGCATGTCCCAAATTGATGCTATGAACAACATCAACACAAGCAGAAATTCTCTATGTTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTACCTTCCAGAGCATTGGAATAACATGCAGTTTGCAGACTTGGAAGTGGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAGGAGCGGAAGTTACTTGATGTATGTTTTCCCCAAATAGGATCCTAG 1587 0.4253 MKTNTNVSGERKSRKRRSSGTDSVENTLEKWKEYNRKQQLGSRENGVEVIQKAPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGSSARLNFPDPSVEPVHSNGSSSSSSSSSGCDKKSPSGSSENDGDVEKAGSERNLHQPHEEKPRFSEVGVFEVTQEKLVLSGGCVADDSIEELKEMTSGFEQCQTSEECKAITLKNIKSEIPEESEGIERELERVLKNSGIGEEGNNLLQNEPLDIAMNTGANYCSSSDAAEHDIVEKSEETRGESVEALKPCELSCSSHCLGCMHNMLPDSNSKPHSEHFSNNQTEASIARKHTEEVISEILGLCHSKSLKISHDQSPHEHYRTEHFDEMRTQLKCFECKLRAHSIHYKTQASMVGDSNYPSMQGIHMFGGGTVGPIESMSQIDAMNNINTSRNSLCLCDLSQQLHKLGGYLPEHWNNMQFADLEVGYDYSFLNPDYDFGLLEERKLLDVCFPQIGS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01273 528 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Viun5g01273 528 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Viun5g01273 528 MobiDBLite consensus disorder prediction 144 167 - -
Viun5g01273 528 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Viun5g01273 528 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Viun5g01273 528 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Viun5g01273 528 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Viun5g01273 528 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Viun5g01273 528 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Viun5g01273 528 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 311 - -
Viun5g01273 528 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Viun5g01273 528 MobiDBLite consensus disorder prediction 141 198 - -
Viun5g01273 528 MobiDBLite consensus disorder prediction 168 197 - -
Viun5g01273 528 MobiDBLite consensus disorder prediction 1 30 - -
Viun5g01273 528 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01273 Viun-Chr5 9222083 9224305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01273 1 160 AP2-EREBP Transcription Factor Family AT2G40340 52.761 2.90e-44 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun5g01273 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01273 - - gmx:100500303 763.066