Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01243 ATGACCATGGGTGATCATAACAGTAACTGGGGAACTTCTGAATATAATCATCATCAACTTGGACTTGATGTTCCAAAGTTCAAGTCTGTTCAACCTCCTTCTCTACCTTTCTCTCCCTCTCCAGCCTCCCCTTCTTCTTACTTGGCCTTTTCTTCTGCTTTCAGCCCATCTGAGTTCTTCAACCCTTCTTTGTTTCTGCCTTCTCCAAAAATTTTTGCATCTCCGACTACTGAAGCTTTGGCTGCCCAGACCTTCAACTGTTCAGGAGAAGAACAACAACAACAACAACGTCACAAGGAGGATGAGAAAAACTTCTCGGACTTCTCTTTCCAAACCCAAATCCAATCTTCCTCAGGCATGCTTCAAGTGCAGGAACCTCTTAAGAAGCAAGATATATGGAAATTCAATGAACCTTCAAAGCGAACCGATTATTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTTCGATTCAGAGCTTTTCCTCAGAAATGGCATCAGGCAAAGCAGAACTACAAAGCAATTCAGTTCCTGGGTCTGGTCATTTTGATTACGCCAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCAGAAGACGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTTGAGAAGTCTTTGGATGGCCAAATCACTGAAATAGTGTACAAGGGCCATCATAACCACCCAAAACCACAGTCTATTAGAAGAGGAAGCTCTCAATCAATTCATCAACCTTCTTCATCTTGCACAAACTCGGGGATTTCTGATCAATCAGTGGTGACCCTAAGCAATCCACAAATGGATCATTTCTCCATGCAGGAAGATTCTTCAGCTTCTGTAGGAGAGGAAGAGTTTGAACAAACATCCCAAACCAGTTATTCTGGGGGAGATGAAGATAACCTTGGACCACAGTCCAAAAGATGGAAAGGAGATAATGAAAACGATGACTATTCGGCCGCAGGGAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAACCCAAATGCGAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCACATGATATCAAAGCTGTGATTACAACTTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAAAAATTCTCTGAACAGCAACATATCAGCTCCTATAAGACCCTCTGCAGTGAACTGTTATTCTAACTCATCAGGTTTAAAAAATTCTCTCTACAATAATACCAGGCTTCCAGCAACCGGAAATCAAGAATCTTTTGCACTGGACAAGTTCCAGAACCCTGGTAGTTTTGGCCAATCGGGTCCAAACAAATCAATGGGTTCATACAACGATCATGCACCGTACTCGCATGCTACATTCTCAAATGCCAAGGATGAGAGAAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTGA 1617 0.423 MTMGDHNSNWGTSEYNHHQLGLDVPKFKSVQPPSLPFSPSPASPSSYLAFSSAFSPSEFFNPSLFLPSPKIFASPTTEALAAQTFNCSGEEQQQQQRHKEDEKNFSDFSFQTQIQSSSGMLQVQEPLKKQDIWKFNEPSKRTDYSSERTATKSEYPSIQSFSSEMASGKAELQSNSVPGSGHFDYANASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSIRRGSSQSIHQPSSSCTNSGISDQSVVTLSNPQMDHFSMQEDSSASVGEEEFEQTSQTSYSGGDEDNLGPQSKRWKGDNENDDYSAAGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNKNSLNSNISAPIRPSAVNCYSNSSGLKNSLYNNTRLPATGNQESFALDKFQNPGSFGQSGPNKSMGSYNDHAPYSHATFSNAKDERKDDSFLQSFLSKDF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01243 538 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 SMART WRKY_cls 367 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 MobiDBLite consensus disorder prediction 172 224 - -
Viun5g01243 538 MobiDBLite consensus disorder prediction 172 192 - -
Viun5g01243 538 Gene3D WRKY domain 184 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 Pfam WRKY DNA -binding domain 368 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 MobiDBLite consensus disorder prediction 298 348 - -
Viun5g01243 538 MobiDBLite consensus disorder prediction 485 514 - -
Viun5g01243 538 MobiDBLite consensus disorder prediction 249 282 - -
Viun5g01243 538 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 443 IPR044810 GO:0003700
Viun5g01243 538 MobiDBLite consensus disorder prediction 298 325 - -
Viun5g01243 538 MobiDBLite consensus disorder prediction 259 282 - -
Viun5g01243 538 ProSiteProfiles WRKY domain profile. 193 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 MobiDBLite consensus disorder prediction 485 525 - -
Viun5g01243 538 SUPERFAMILY WRKY DNA-binding domain 194 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 Gene3D WRKY domain 354 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01243 538 MobiDBLite consensus disorder prediction 328 348 - -
Viun5g01243 538 FunFam WRKY transcription factor 187 258 - -
Viun5g01243 538 FunFam WRKY transcription factor 33 354 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01243 Viun-Chr5 8948916 8952011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01243 22 460 WRKY Transcription Factor Family AT2G38470 48.667 4.78e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g01243 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01243 K13424 - gmx:100776837 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01243 5 8948916 8952011 Viun5g01243 5 8948916 8952011 ECH