Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01242 ATGACCATGGGTGATCATAACAGTAACTGGGGAACTTCTGAATATAATCATCATCAACTTGGACTTGATGTTCCAAAGTTCAAGTCTGTTCAACCTCCTTCTCTACCTTTCTCTCCCTCTCCAGCCTCCCCTTCTTCTTACTTGGCCTTTTCTTCTGCTTTCAGCCCATCTGAGTTCTTCAACCCTTCTTTGTTTCTGCCTTCTCCAAAAATTTTTGCATCTCCGACTACTGAAGCTTTGGCTGCCCAGACCTTCAACTGTTCAGGAGAAGAACAACAACAACAACAACGTCACAAGGAGGATGAGAAAAACTTCTCGGACTTCTCTTTCCAAACCCAAATCCAATCTTCCTCAGGCATGCTTCAAGTGGAACCTCTTAAGAAGCAAGATATATGGAAATTCAATGAACCTTCAAAGCGAACCGATTATTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTTCGATTCAGAGCTTTTCCTCAGAAATGGCATCAGGCAAAGCAGAACTACAAAGCAATTCAGTTCCTGGGTCTGGTCATTTTGATTACGCCAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCAGAAGACGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTTGAGAAGTCTTTGGATGGCCAAATCACTGAAATAGTGTACAAGGGCCATCATAACCACCCAAAACCACAGTCTATTAGAAGAGGAAGCTCTCAATCAATTCATCAACCTTCTTCATCTTGCACAAACTCGGGGATTTCTGATCAATCAGTGGTGACCCTAAGCAATCCACAAATGGATCATTTCTCCATGCAGGAAGATTCTTCAGCTTCTGTAGGAGAGGAAGAGTTTGAACAAACATCCCAAACCAGTTATTCTGGGGGAGATGAAGATAACCTTGGACCACAGTCCAAAAGATGGAAAGGAGATAATGAAAACGATGACTATTCGGCCGCAGGGAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAACCCAAATGCGAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCACATGATATCAAAGCTGTGATTACAACTTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAAAAATTCTCTGAACAGCAACATATCAGCTCCTATAAGACCCTCTGCAGTGAACTGTTATTCTAACTCATCAGGTTTAAAAAATTCTCTCTACAATAATACCAGGCTTCCAGCAACCGGAAATCAAGAATCTTTTGCACTGGACAAGTTCCAGAACCCTGGTAGTTTTGGCCAATCGGGTCCAAACAAATCAATGGGTTCATACAACGATCATGCACCGTACTCGCATGCTACATTCTCAAATGCCAAGGATGAGAGAAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTGA 1614 0.4226 MTMGDHNSNWGTSEYNHHQLGLDVPKFKSVQPPSLPFSPSPASPSSYLAFSSAFSPSEFFNPSLFLPSPKIFASPTTEALAAQTFNCSGEEQQQQQRHKEDEKNFSDFSFQTQIQSSSGMLQVEPLKKQDIWKFNEPSKRTDYSSERTATKSEYPSIQSFSSEMASGKAELQSNSVPGSGHFDYANASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSIRRGSSQSIHQPSSSCTNSGISDQSVVTLSNPQMDHFSMQEDSSASVGEEEFEQTSQTSYSGGDEDNLGPQSKRWKGDNENDDYSAAGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNKNSLNSNISAPIRPSAVNCYSNSSGLKNSLYNNTRLPATGNQESFALDKFQNPGSFGQSGPNKSMGSYNDHAPYSHATFSNAKDERKDDSFLQSFLSKDF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01242 537 SUPERFAMILY WRKY DNA-binding domain 193 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 FunFam WRKY transcription factor 33 353 419 - -
Viun5g01242 537 Gene3D WRKY domain 183 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 MobiDBLite consensus disorder prediction 297 324 - -
Viun5g01242 537 SMART WRKY_cls 366 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 SMART WRKY_cls 197 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 SUPERFAMILY WRKY DNA-binding domain 358 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 Gene3D WRKY domain 353 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 MobiDBLite consensus disorder prediction 484 513 - -
Viun5g01242 537 MobiDBLite consensus disorder prediction 248 281 - -
Viun5g01242 537 MobiDBLite consensus disorder prediction 163 223 - -
Viun5g01242 537 MobiDBLite consensus disorder prediction 163 191 - -
Viun5g01242 537 MobiDBLite consensus disorder prediction 327 347 - -
Viun5g01242 537 FunFam WRKY transcription factor 186 257 - -
Viun5g01242 537 Pfam WRKY DNA -binding domain 367 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 ProSiteProfiles WRKY domain profile. 192 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 ProSiteProfiles WRKY domain profile. 361 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01242 537 MobiDBLite consensus disorder prediction 258 281 - -
Viun5g01242 537 MobiDBLite consensus disorder prediction 297 347 - -
Viun5g01242 537 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 442 IPR044810 GO:0003700
Viun5g01242 537 MobiDBLite consensus disorder prediction 484 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01242 Viun-Chr5 8948909 8952011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01242 192 459 WRKY Transcription Factor Family AT2G38470 64.158 5.44e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g01242 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01242 K13424 - gmx:100776837 880.552