Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01216 ATGGCAGAACCTGCTAGTTATTGGAGTCTTGAACGTGATGTTGACCAAATACTCGTTACTTTGAAGAAAGGAACTCAATTGATAAAGTACAGTCGAAAGACGAAGCCAAAAGTTTGTTCATTCAAACTTTCTTTGGATGAGAAAACGTTGATTTGGATTTCTCATAAGAAGGAAAGGAATTTGAAATTATCTTCAGTTTCTCAAATTATCTCTGGACAAAGAACTGCTGTTTTTAGAAGATATTTGCAACCAGAAAAGAATTATATTTCATTTTCACTTGTTTATAATAATGGGGCACGAACACTTGATTTGATATGCAAGGACAAAGATGAGACAGAGACATGGTTTAGAGGCCTTAAGACATTAATTTCTTCAGAAAAGTTAAATAGAAGCGTTGGAAGTGAATTTTTTTATGATGGTGTTAATGTAATCCGAAATGGTCATCCTTTTGCTGCAACACTACAATATGCTATAAGCTTTGCTGGTAACAATGTCCCTTTTGATTTTGATACTCATAAATGTTCATTGAATTTGGTAAGAACAGATGTGGGGTTAGAGCGTGCTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTATCAGTGTGTCAAGTACACCCAGTGTTTCAAGTTCCGGATCAGGACCAGATGACATAGAATCACTCGGTGATGTTTATGTGTGGGGAGAGGTTTGGGCAGATGGGGCTTCGCATGATGCTTTCGGTCCTCAACCCCCTTCTACAACAGATGTTTTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCAGGAATGCGACACATTGCTTTAGTAACAAGACAAGGAGAGGTTTTTACGTGGGGAGAAGAATCTGGGGGGAGACTTGGTCATGGAACTGACAGAGATTTTGTTCGTCCTCATCTTGTTGAGTTTCTGGCAGTTACCAACATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGGTGTGTCTACTTCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTCGGACATGGAACTGATGTTAGCCATTGGATACCGAAGAAGGTTAGTGGTCCTCTTGAAGGGCTTCAAGTTATATCTATATCATGTGGCACATGGCATTCAGCATTAGCAACTTCTAATGGAAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTGTTGGGTCATGGAAATAGACAGAGTGTATCGTATCCAAAAGAGGTGCAATTGTTGAGTGGATTGAAAACTATTAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAGTCTGGTTCGAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACCTGTGTCTCTACACTTATCGAATACAACTTTCATCAAATAGCTTGTGGGCACACTATGACTGTTGCCCTCACTACATCTGGTCATGTGTTCACCATGGGAAACACTGAAAATGGCCAATTGGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTGGTACAAGATAAATTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGGTCACATCATGTTGCAGCTTTAACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAGTCTCCAACATTAGTGGAATCCTTGAAAGATAGACATGTGAAGAATATTTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCACAAATGGGTCTCTGGAGTTGATCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGACACAATTGTTATAATTGTGGATTAGTGCATTGTCATGGTTGCAGTTCAAGAAAAGTTCTAAAAGCAGCATTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGACTCTTGTTATAATAAACTCAAAGCTGTTGAGGCATGTGCTAGTGCAAATCTCAATAGAAAAATTACTGCTACTACTTCTGCACCTCGCAGTTCCATGGATTCCAGGGAAAGATTTGGCACTGGAGAGATTAAGTCTTCAAGACTTATTCTGCCTCCAATCACAGAACCAGTAAAATATCATCAAATATTGGCTAATAAGCTGGGAAACAAATATGATTATCCTTCCATGTGTCCATCTTCACAGATTCAACCACTACTACAATTGAATGAGATTACATTTTCAAATTCAATGAGTCCCTCTCAAAACGTTATGAGGTCTGCTATATCTTCTAATCCACCACCAATTTCACCTGCAAGACCATCATCTCCTCATACAAGAAGGCCAAGCTCACCACGTTCTCGAACAGGATTTTCTAGAAGTCTCATTGAAAGTTTGAGGAAGTCAAATGAACTTCTAAATCAAGAAGTTTCAGTGCTGCAAAACCAGCAAAAAAGAGGCATGGAAATGGAAAAGCTTCAGAAAAATGTTAGGGAAGCTACTTCCTTGTCTTTAAAGGAATCTTCTAAACATAAAACTACCAAAGAGTTTTTTAAGTCTACCTTAGATCAGATGAAGGAAATGATGGAGAAGTTGCCACCAGAAGCTTTAGATAATGAAAATTGGAAAACCATACTTACTGGAGCTGAAGATTTTCTGAGAGTTACTTCAGAATCTGAAATGCTAAGTAACACTTCTCAACAACAAAATTATCCTAATAAACTTGACTCATATGATAACAGTAACAACTCATATTTATCAAATAATGAAGCATCAATGTCTTTACAAAACTCTCTAAGAGAACCTTCAAGATCAATGAGAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTATATGTAACATTAACAGTAAAGCCTAATGGTGTCAAGGCTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCGTGAACGTCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAAGAAATATAGTACTTTAGCAGCTACAAAATCTGAAGGTTCTGCGTCATCTAACACACTACCACCACCACCTGCAGAAGAAAATATTGAGGCAATGTCTTCTTAA 3129 0.3829 MAEPASYWSLERDVDQILVTLKKGTQLIKYSRKTKPKVCSFKLSLDEKTLIWISHKKERNLKLSSVSQIISGQRTAVFRRYLQPEKNYISFSLVYNNGARTLDLICKDKDETETWFRGLKTLISSEKLNRSVGSEFFYDGVNVIRNGHPFAATLQYAISFAGNNVPFDFDTHKCSLNLVRTDVGLERANMQPRTSIGDGFRISVSSTPSVSSSGSGPDDIESLGDVYVWGEVWADGASHDAFGPQPPSTTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGTDRDFVRPHLVEFLAVTNMDFVACGENHTCGVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVSGPLEGLQVISISCGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEACASANLNRKITATTSAPRSSMDSRERFGTGEIKSSRLILPPITEPVKYHQILANKLGNKYDYPSMCPSSQIQPLLQLNEITFSNSMSPSQNVMRSAISSNPPPISPARPSSPHTRRPSSPRSRTGFSRSLIESLRKSNELLNQEVSVLQNQQKRGMEMEKLQKNVREATSLSLKESSKHKTTKEFFKSTLDQMKEMMEKLPPEALDNENWKTILTGAEDFLRVTSESEMLSNTSQQQNYPNKLDSYDNSNNSYLSNNEASMSLQNSLREPSRSMREGETQVIEQFEPGVYVTLTVKPNGVKAFKRVRFSKRRFRERQAEEWWNKNKDRVLKKYSTLAATKSEGSASSNTLPPPPAEENIEAMSS 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01216 1042 Coils Coil 809 829 - -
Viun5g01216 1042 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Viun5g01216 1042 MobiDBLite consensus disorder prediction 764 779 - -
Viun5g01216 1042 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Viun5g01216 1042 MobiDBLite consensus disorder prediction 905 956 - -
Viun5g01216 1042 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Viun5g01216 1042 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Viun5g01216 1042 Gene3D - 12 131 IPR011993 -
Viun5g01216 1042 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Viun5g01216 1042 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Viun5g01216 1042 Pfam Transcription factor BRX N-terminal domain 853 887 IPR027988 -
Viun5g01216 1042 ProSiteProfiles BRX domain profile. 957 1012 IPR013591 -
Viun5g01216 1042 MobiDBLite consensus disorder prediction 1011 1042 - -
Viun5g01216 1042 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Viun5g01216 1042 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Viun5g01216 1042 SMART fyve_4 606 675 IPR000306 GO:0046872
Viun5g01216 1042 MobiDBLite consensus disorder prediction 789 805 - -
Viun5g01216 1042 MobiDBLite consensus disorder prediction 905 948 - -
Viun5g01216 1042 Gene3D - 448 620 IPR009091 -
Viun5g01216 1042 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Viun5g01216 1042 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Viun5g01216 1042 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Viun5g01216 1042 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Viun5g01216 1042 PRINTS Chromosome condensation regulator RCC1 signature 265 278 IPR000408 -
Viun5g01216 1042 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Viun5g01216 1042 CDD PH_PLC_plant-like 12 124 - -
Viun5g01216 1042 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Viun5g01216 1042 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Viun5g01216 1042 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Viun5g01216 1042 SUPERFAMILY FYVE/PHD zinc finger 608 678 IPR011011 -
Viun5g01216 1042 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 872 - -
Viun5g01216 1042 SUPERFAMILY PH domain-like 13 123 - -
Viun5g01216 1042 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 269 279 IPR000408 -
Viun5g01216 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 680 IPR013083 -
Viun5g01216 1042 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Viun5g01216 1042 MobiDBLite consensus disorder prediction 1015 1031 - -
Viun5g01216 1042 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 443 - -
Viun5g01216 1042 Pfam Transcription factor regulating root and shoot growth via Pin3 957 1011 IPR013591 -
Viun5g01216 1042 CDD FYVE_like_SF 618 670 - -
Viun5g01216 1042 Gene3D - 202 447 IPR009091 -
Viun5g01216 1042 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Viun5g01216 1042 Pfam Regulator of chromosome condensation (RCC1) repeat 336 385 IPR000408 -
Viun5g01216 1042 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Viun5g01216 1042 Pfam Regulator of chromosome condensation (RCC1) repeat 283 329 IPR000408 -
Viun5g01216 1042 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Viun5g01216 1042 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Viun5g01216 1042 MobiDBLite consensus disorder prediction 764 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01216 Viun-Chr5 8683577 8689871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01216 954 1012 Major Intrinsic Protein MIP AT1G31880 37.288 1.43e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01216 - - gmx:100779684 1584.7