Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01214 ATGGCAGAACCTGCTAGTTATTGGAGTCTTGAACGTGATGTTGACCAAATACTCGTTACTTTGAAGAAAGGAACTCAATTGATAAAGTACAGTCGAAAGACGAAGCCAAAAGTTTGTTCATTCAAACTTTCTTTGGATGAGAAAACGTTGATTTGGATTTCTCATAAGAAGGAAAGGAATTTGAAATTATCTTCAGTTTCTCAAATTATCTCTGGACAAAGAACTGCTGTTTTTAGAAGATATTTGCAACCAGAAAAGAATTATATTTCATTTTCACTTGTTTATAATAATGGGGCACGAACACTTGATTTGATATGCAAGGACAAAGATGAGACAGAGACATGGTTTAGAGGCCTTAAGACATTAATTTCTTCAGAAAAGTTAAATAGAAGCGTTGGAAGTGAATTTTTTTATGATGGTGTTAATGTAATCCGAAATGGTCATCCTTTTGCTGCAACACTACAATATGCTATAAGCTTTGCTGGTAACAATGTCCCTTTTGATTTTGATACTCATAAATGTTCATTGAATTTGGTAAGAACAGATGTGGGGTTAGAGCGTGCTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTATCAGTGTGTCAAGTACACCCAGTGTTTCAAGTTCCGGATCAGGACCAGATGACATAGAATCACTCGGTGATGTTTATGTGTGGGGAGAGGTTTGGGCAGATGGGGCTTCGCATGATGCTTTCGGTCCTCAACCCCCTTCTACAACAGATGTTTTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCAGGAATGCGACACATTGCTTTAGTAACAAGACAAGGAGAGGTTTTTACGTGGGGAGAAGAATCTGGGGGGAGACTTGGTCATGGAACTGACAGAGATTTTGTTCGTCCTCATCTTGTTGAGTTTCTGGCAGTTACCAACATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGGTGTGTCTACTTCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTCGGACATGGAACTGATGTTAGCCATTGGATACCGAAGAAGGTTAGTGGTCCTCTTGAAGGGCTTCAAGTTATATCTATATCATGTGGCACATGGCATTCAGCATTAGCAACTTCTAATGGAAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTGTTGGGTCATGGAAATAGACAGAGTGTATCGTATCCAAAAGAGGTGCAATTGTTGAGTGGATTGAAAACTATTAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAGTCTGGTTCGAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACCTGTGTCTCTACACTTATCGAATACAACTTTCATCAAATAGCTTGTGGGCACACTATGACTGTTGCCCTCACTACATCTGGTCATGTGTTCACCATGGGAAACACTGAAAATGGCCAATTGGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTGGTACAAGATAAATTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGGTCACATCATGTTGCAGCTTTAACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAGTCTCCAACATTAGTGGAATCCTTGAAAGATAGACATGTGAAGAATATTTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCACAAATGGGTCTCTGGAGTTGATCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGACACAATTGTTATAATTGTGGATTAGTGCATTGTCATGGTTGCAGTTCAAGAAAAGTTCTAAAAGCAGCATTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGACTCTTGTTATAATAAACTCAAAGCTGTTGAGGCATGTGCTAGTGCAAATCTCAATAGAAAAATTACTGCTACTACTTCTGCACCTCGCAGTTCCATGGATTCCAGGGAAAGATTTGGCACTGGAGAGATTAAGTCTTCAAGACTTATTCTGCCTCCAATCACAGAACCAGTAAAATATCATCAAATATTGGCTAATAAGCTGGGAAACAAATATGATTATCCTTCCATGTGTCCATCTTCACAGATTCAACCACTACTACAATTGAATGAGATTACATTTTCAAATTCAATGAGTCCCTCTCAAAACGTTATGAGGTCTGCTATATCTTCTAATCCACCACCAATTTCACCTGCAAGACCATCATCTCCTCATACAAGAAGGCCAAGCTCACCACGTTCTCGAACAGGATTTTCTAGAAGTCTCATTGAAAGTTTGAGGAAGTCAAATGAACTTCTAAATCAAGAAGTTTCAGTGCTGCAAAACCAGTTACGAAGTCTGAAGCAAAAAAGAGGCATGGAAATGGAAAAGCTTCAGAAAAATGTTAGGGAAGCTACTTCCTTGTCTTTAAAGGAATCTTCTAAACATAAAACTACCAAAGAGTTTTTTAAGTCTACCTTAGATCAGATGAAGGAAATGATGGAGAAGTTGCCACCAGAAGCTTTAGATAATGAAAATTGGAAAACCATACTTACTGGAGCTGAAGATTTTCTGAGAGTTACTTCAGAATCTGAAATGCTAAGTAACACTTCTCAACAACAAAATTATCCTAATAAACTTGACTCATATGATAGTTCTTCTAAATTGCAATACGAAAATAATGAAACTGAAGGAGTTGAATCATCATCACGAGATGAAGGAAATGTTCTTCAAGACAGTAACAACTCATATTTATCAAATAATGAAGCATCAATGTCTTTACAAAACTCTCTAAGAGAACCTTCAAGATCAATGAGAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTATATGTAACATTAACAGTAAAGCCTAATGGTGTCAAGGCTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCGTGAACGTCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAAGAAATATAGTACTTTAGCAGCTACAAAATCTGAAGGTTCTGCGTCATCTAACACACTACCACCACCACCTGCAGAAGAAAATATTGCTTCTTCTTCATCATCACCATCATCACCTTGTCTACCATCATCATCAACACAACCGCCACCATAA 3273 0.3828 MAEPASYWSLERDVDQILVTLKKGTQLIKYSRKTKPKVCSFKLSLDEKTLIWISHKKERNLKLSSVSQIISGQRTAVFRRYLQPEKNYISFSLVYNNGARTLDLICKDKDETETWFRGLKTLISSEKLNRSVGSEFFYDGVNVIRNGHPFAATLQYAISFAGNNVPFDFDTHKCSLNLVRTDVGLERANMQPRTSIGDGFRISVSSTPSVSSSGSGPDDIESLGDVYVWGEVWADGASHDAFGPQPPSTTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGTDRDFVRPHLVEFLAVTNMDFVACGENHTCGVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVSGPLEGLQVISISCGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEACASANLNRKITATTSAPRSSMDSRERFGTGEIKSSRLILPPITEPVKYHQILANKLGNKYDYPSMCPSSQIQPLLQLNEITFSNSMSPSQNVMRSAISSNPPPISPARPSSPHTRRPSSPRSRTGFSRSLIESLRKSNELLNQEVSVLQNQLRSLKQKRGMEMEKLQKNVREATSLSLKESSKHKTTKEFFKSTLDQMKEMMEKLPPEALDNENWKTILTGAEDFLRVTSESEMLSNTSQQQNYPNKLDSYDSSSKLQYENNETEGVESSSRDEGNVLQDSNNSYLSNNEASMSLQNSLREPSRSMREGETQVIEQFEPGVYVTLTVKPNGVKAFKRVRFSKRRFRERQAEEWWNKNKDRVLKKYSTLAATKSEGSASSNTLPPPPAEENIASSSSSPSSPCLPSSSTQPPP 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01214 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 685 IPR013083 -
Viun5g01214 1090 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Viun5g01214 1090 MobiDBLite consensus disorder prediction 764 779 - -
Viun5g01214 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Viun5g01214 1090 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Viun5g01214 1090 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 443 - -
Viun5g01214 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Viun5g01214 1090 Pfam Transcription factor regulating root and shoot growth via Pin3 989 1043 IPR013591 -
Viun5g01214 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Viun5g01214 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 283 329 IPR000408 -
Viun5g01214 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Viun5g01214 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Viun5g01214 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Viun5g01214 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 336 385 IPR000408 -
Viun5g01214 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Viun5g01214 1090 Gene3D - 446 608 IPR009091 -
Viun5g01214 1090 MobiDBLite consensus disorder prediction 1043 1090 - -
Viun5g01214 1090 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Viun5g01214 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 870 - -
Viun5g01214 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Viun5g01214 1090 MobiDBLite consensus disorder prediction 910 980 - -
Viun5g01214 1090 ProSiteProfiles BRX domain profile. 989 1044 IPR013591 -
Viun5g01214 1090 MobiDBLite consensus disorder prediction 1047 1081 - -
Viun5g01214 1090 Pfam Transcription factor BRX N-terminal domain 858 892 IPR027988 -
Viun5g01214 1090 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Viun5g01214 1090 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Viun5g01214 1090 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Viun5g01214 1090 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Viun5g01214 1090 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Viun5g01214 1090 PRINTS Chromosome condensation regulator RCC1 signature 265 278 IPR000408 -
Viun5g01214 1090 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Viun5g01214 1090 SMART fyve_4 606 675 IPR000306 GO:0046872
Viun5g01214 1090 MobiDBLite consensus disorder prediction 789 805 - -
Viun5g01214 1090 SUPERFAMILY PH domain-like 13 123 - -
Viun5g01214 1090 MobiDBLite consensus disorder prediction 910 988 - -
Viun5g01214 1090 SUPERFAMILY FYVE/PHD zinc finger 608 678 IPR011011 -
Viun5g01214 1090 CDD PH_PLC_plant-like 12 124 - -
Viun5g01214 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Viun5g01214 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Viun5g01214 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 269 279 IPR000408 -
Viun5g01214 1090 Gene3D - 12 131 IPR011993 -
Viun5g01214 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Viun5g01214 1090 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Viun5g01214 1090 CDD FYVE_like_SF 618 670 - -
Viun5g01214 1090 Gene3D - 202 445 IPR009091 -
Viun5g01214 1090 Coils Coil 809 836 - -
Viun5g01214 1090 MobiDBLite consensus disorder prediction 764 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01214 Viun-Chr5 8683568 8695146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01214 986 1044 Major Intrinsic Protein MIP AT1G31880 37.288 1.30e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01214 - - gmx:100779684 1618.21