Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01210 ATGGCTTCTAGGGACAAAACAAGAGCGTCTCTGGAACAGACTTTGCAACAACTTCGCGATGTCACGAACTCCACTGCACTGAACAAAGCTTCAATCATTGTAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAAGTGGAGGGACTGAACTCGGAGCTGGGGATCACGGAATCATCTTCAAACTCTCAAATTCATGAACTACCTGCGGTAACTGTGAAAACCCTAGAAAAGGGTTTCCTCATTAATGTGCTTTTGGAGAAGAATAGCCCTGGTATGCTCGTGTCCGTACTTGAAGCCTTCGAAGAACTTGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCCGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAATGGTAAAGCAAGCAGTGTTGCGAGCAATGAAGAAGGAGGAGTAA 456 0.4539 MASRDKTRASLEQTLQQLRDVTNSTALNKASIIVDASKYIEELKQKVEGLNSELGITESSSNSQIHELPAVTVKTLEKGFLINVLLEKNSPGMLVSVLEAFEELGLDVLDARVSCEDSFQLEAVGRESHKNDSVDAQMVKQAVLRAMKKEE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01210 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 61 IPR036638 GO:0046983
Viun5g01210 151 Coils Coil 33 60 - -
Viun5g01210 151 CDD ACT_UUR-ACR-like 88 147 - -
Viun5g01210 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 148 - -
Viun5g01210 151 Gene3D - 4 59 IPR036638 GO:0046983
Viun5g01210 151 ProSiteProfiles ACT domain profile. 82 151 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01210 Viun-Chr5 8624370 8625996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01210 25 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.777 2.91e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01210 - - vra:106759069 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01210 5 8624370 8625996 Viun5g01210 5 8624370 8625996 ECH
Viun5g01210 5 8624370 8625996 Viun1g03281 1 40460431 40461883 ECH
Viun5g01210 5 8624370 8625996 Viun8g02408 8 33858429 33860124 ECH
Viun6g01242 6 21647873 21649704 Viun5g01210 5 8624370 8625996 ECH
Viun5g01210 5 8624370 8625996 Viun6g01242 6 21647873 21649704 ECH