Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01206 ATGCACGTCACGTCCTCACACAGCCACATGAAAGCTGAGCTTAAGGGCACGTCCATTTCCTTTCAAAACCCTACCACTCTCTTTAACACACCTCACAACCCTCTCTCTGGAGCACTCAAAGGTTGTCTGGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTCGGGGACACAAACCAAAGACTCACCTCGTGGTTCCTAAGGGCATTGATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTGATGAGCGTCACCGAGCTCGCCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAGATTTACAAAGCAATAACTGGGTACCAAAGGGTACATATTCTAGATTTTAGTACAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGACCTCCTTCACTCAGAATCACAGTTCCATTTTGTAGACCCCATGTACCCCCCATGGTCAATGTATCTATACACGAGGTTGGTTTACGTTTGGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAACATTATAGGAAACACAGGACCAACACCTGCGGAATTGAGCGATGAATCATATAGCTTCCATTTTGAAGCAATGTTAAGTCTCTTGAACCCTACTACGCTGAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTGCGTTATTTGTCTGATGATAGAAAGGGAAGCCGCCAAAGTCATTCCCTTAGGGATGCTTTTTTAAATATAATAAAAGGTTTTAACCCGCGGATTGTGCTCTTGGTTGATGAGGATTGTGACCTTAGTGCTTCTAGTCTCACGTCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACATTTTTGCCTAAAGATAATGGTCAGAGGGCGGAGTTTGAATCTGACATAGGGCAGAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAGTGTTCCGTTTTGTGATGAAACTGTTAGGGAAGTTAAAGGGTTGCTAGATGAACATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGTTAGTTCTCACATGGAAAGGAAACAGTTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATGTTGGAATGGATGCAAGTCTGCCATAA 1380 0.4471 MHVTSSHSHMKAELKGTSISFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGYQRVHILDFSTTHCMQWPTFIDALAKNPEGPPSLRITVPFCRPHVPPMVNVSIHEVGLRLGNFAKFRDVPFEFNIIGNTGPTPAELSDESYSFHFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSRQSHSLRDAFLNIIKGFNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDNGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDHVGMDASLP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01206 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 433 IPR005202 -
Viun5g01206 459 ProSiteProfiles GRAS family profile. 42 444 IPR005202 -
Viun5g01206 459 Pfam GRAS domain family 52 443 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01206 Viun-Chr5 8582031 8583956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01206 25 446 GRAS Transcription Factor Family AT3G49950 44.316 1.17e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g01206 GRAS 3.2e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01206 - - gmx:100805056 860.907