LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g01191	ATGCAGAAAATGGAACAGAAGGGAGGTGTGCTTCTGCAAAAATATGAACTTGGTAGGTTATTAGGACAAGGGACCTTCGCAAAGGTCTACCATGGTAGGAATCTGATAACTGGCATGAGTGTGGCCATTAAGGTAATTGATAAGGAAAAAATTTTGAAAGTTGGATTGGTTGATCAGATTAAGCGTGAAGTTTCAGTGATGAGATTAATCAGACATCGAAATGTGGTTGAGCTTTATGAGGTAATGGCCACTAAAACCAAAATTTTCTTTGTCATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGCTACTCAAAGGAAGGCTGAAGGTGGATGCTGCTAGGAAATATTTTCAGCAACTGATAAGCGCTGTTGACTACTGCCATAGCAGGGGTGTGTGTCATCGAGACTTGAAGCCAGAAAATCTACTTTTGGACGAAAATGATAATTTGATGGTTTCAGACTTTGGGTTGAGTGCCCTTACTGATTCCAAACGCCAAGATGGATTGCTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGCTATGATGGGATTAAAGCAGATATATGGTCATGTGGGGTAATCTTGTTTGTTCTGTTGGCCGGTCATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATCAGTAAAGGGGTATTCAAATTTCCTAAATGGTTTGCACCAGATATTCGCCGGTTATTATCCAGAATATTGGATCCAAACCCAAAATCCAGGATATCAATTGCCAGAATTATGAAATATTCTTGGTTTAAAGTGGGGTTGGAGAATCCTGCTATTACAGAAACAGAAAACCAAGAACCAGCTCCCCTGAATGCTGATGGAATACTTGAAGCGTGCGAGAATGATGATCCACCTATTGCAGAGTCAAAGCATGAACTGACCAAGCCTTGTAACTTGAATGCTTTTGATATTATCTCCTTCTCAACTGGTTTTGATTTATCTGGTATGTTTGAGGACACTGTTCCCATGAAAGAGATGCGGTTCATGTCAAATAAGCCTGCTTCGAGTATAATCTCTAAGTTGGAAGAAATTTGTAAGAAGCTTTGCTTGAAAGTAAGGAAGAAAGATGGAGGATTGTTGAAGTTGGAGGGTTGTAAGGAAGGCAGAAAAGGGAGTTTAGGTGTAGATGCTGAGATTTTTGAGATCACCCCACACCTCCACATGGTTGAACTTCGAAAGTCCAATGGTGATACCATGGAGTATCAGAAGCTTTTTACACAAGATATCAGACCAGCACTTGAAGACATTGTTTGGACATGGCAAGGAGAACAACCACAGCAAGAGAAACAACATCATGAAGTAGTTCAGGAAGAGCACCAACCTTCTCATACCGCTTAG	1395	0.4108	MQKMEQKGGVLLQKYELGRLLGQGTFAKVYHGRNLITGMSVAIKVIDKEKILKVGLVDQIKREVSVMRLIRHRNVVELYEVMATKTKIFFVMEHAKGGELFNKLLKGRLKVDAARKYFQQLISAVDYCHSRGVCHRDLKPENLLLDENDNLMVSDFGLSALTDSKRQDGLLHTTCGTPAYVAPEVINRKGYDGIKADIWSCGVILFVLLAGHLPFHDSNLMEMYRKISKGVFKFPKWFAPDIRRLLSRILDPNPKSRISIARIMKYSWFKVGLENPAITETENQEPAPLNADGILEACENDDPPIAESKHELTKPCNLNAFDIISFSTGFDLSGMFEDTVPMKEMRFMSNKPASSIISKLEEICKKLCLKVRKKDGGLLKLEGCKEGRKGSLGVDAEIFEITPHLHMVELRKSNGDTMEYQKLFTQDIRPALEDIVWTWQGEQPQQEKQHHEVVQEEHQPSHTA	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g01191	464	Pfam	NAF domain	315	373	IPR004041	GO:0007165
	Viun5g01191	464	ProSiteProfiles	Protein kinase domain profile.	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01191	464	CDD	CIPK_C	319	432	-	-
	Viun5g01191	464	MobiDBLite	consensus disorder prediction	441	464	-	-
	Viun5g01191	464	CDD	STKc_SnRK3	14	268	-	-
	Viun5g01191	464	FunFam	Non-specific serine/threonine protein kinase	6	94	-	-
	Viun5g01191	464	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Viun5g01191	464	Gene3D	Kinase associated domain 1, KA1	318	438	-	-
	Viun5g01191	464	ProSiteProfiles	NAF domain profile.	313	337	IPR018451	GO:0007165
	Viun5g01191	464	Gene3D	Transferase(Phosphotransferase) domain 1	7	317	-	-
	Viun5g01191	464	SMART	serkin_6	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01191	464	FunFam	Non-specific serine/threonine protein kinase	9	309	-	-
	Viun5g01191	464	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	433	-	-
	Viun5g01191	464	Pfam	Protein kinase domain	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01191	464	SUPERFAMILY	Protein kinase-like (PK-like)	11	270	IPR011009	-
	Viun5g01191	464	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Viun5g01191	464	FunFam	Non-specific serine/threonine protein kinase	313	437	-	-
	Viun5g01191	464	MobiDBLite	consensus disorder prediction	445	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g01191	Viun-Chr5	8483322	8487202	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g01191	4	445	CBL-interacting serine-threonine protein kinases	AT5G58380	64.770	0.0	604

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Viun5g01191		Pkinase	2.2e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g01191	K07198		-	gmx:100811923	760.37