Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01177 ATGAGTTTCCGAGAGGGAAAGTTAGGAGGAGAAGAGAAGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGCTAACAATTGATGATAATCTATTGGTTGACCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTATGGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGCTTCTCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCCTTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTGAAACCTGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCAGATTTTGGCCTCGCTAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACGTACCGTTGGATGGCACCAGAGCTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAATTGTTCTATGGGAGCTACTAACAAATCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGATTGCAGCAAGAGAGGCCCAGCATACCAGATGA 855 0.4269 MSFREGKLGGEEKECEESVLGSTESKSVRENGSLAATQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKIAAREAQHTR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01177 284 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g01177 284 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 272 - -
Viun5g01177 284 FunFam Kinase suppressor of Ras 1 41 131 - -
Viun5g01177 284 Gene3D Phosphorylase Kinase; domain 1 41 131 - -
Viun5g01177 284 SMART serkin_6 52 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01177 284 Gene3D Transferase(Phosphotransferase) domain 1 133 284 - -
Viun5g01177 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Viun5g01177 284 MobiDBLite consensus disorder prediction 1 27 - -
Viun5g01177 284 SUPERFAMILY Protein kinase-like (PK-like) 46 270 IPR011009 -
Viun5g01177 284 Pfam Protein kinase domain 56 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01177 284 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Viun5g01177 284 ProSiteProfiles Protein kinase domain profile. 52 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01177 284 CDD STKc_MAP3K-like 58 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01177 Viun-Chr5 8290286 8294389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01177 40 274 MAP Kinase Kinase Kinase AT5G01850 79.537 3.47e-148 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun5g01177 Pkinase 7.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01177 - - pvu:PHAVU_008G083700g 514.998