Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01176 ATGAGGTTCCACAACACCAAGAAGCACATCATTGGGTATGGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGCTTCTCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCCTTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTGAAACCTGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCAGATTTTGGCCTCGCTAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACGTACCGTTGGATGGCACCAGAGCTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAATTGTTCTATGGGAGCTACTAACAAATCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCCAGCATACCAGATGATATATCTCCTGAACTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCACTCTCTCACCACCATCTCCTCCTTTGCCAGTACCTAACCATGAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTTTCTGCCCGAAACAAAGGAAGGTTTGGTTTTCTTCGCCAATTGTTTTCTTCAAAGAGGACCAAAAACTAA 936 0.4274 MRFHNTKKHIIGYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPVPNHEPEVATTSNGTITEFSARNKGRFGFLRQLFSSKRTKN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01176 311 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01176 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Viun5g01176 311 Gene3D Phosphorylase Kinase; domain 1 9 74 - -
Viun5g01176 311 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01176 311 PRINTS Tyrosine kinase catalytic domain signature 226 248 IPR001245 GO:0004672|GO:0006468
Viun5g01176 311 PRINTS Tyrosine kinase catalytic domain signature 108 126 IPR001245 GO:0004672|GO:0006468
Viun5g01176 311 PRINTS Tyrosine kinase catalytic domain signature 182 204 IPR001245 GO:0004672|GO:0006468
Viun5g01176 311 PRINTS Tyrosine kinase catalytic domain signature 70 83 IPR001245 GO:0004672|GO:0006468
Viun5g01176 311 SUPERFAMILY Protein kinase-like (PK-like) 14 280 IPR011009 -
Viun5g01176 311 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 15 256 - -
Viun5g01176 311 CDD STKc_MAP3K-like 13 255 - -
Viun5g01176 311 Gene3D Transferase(Phosphotransferase) domain 1 77 266 - -
Viun5g01176 311 Pfam Protein tyrosine and serine/threonine kinase 16 255 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01176 Viun-Chr5 8290178 8293277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01176 13 311 MAP Kinase Kinase Kinase AT5G01850 73.375 4.48e-163 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun5g01176 PK_Tyr_Ser-Thr 9.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01176 - - gmx:100809251 544.658