Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01175 ATGAGTTTCCGAGAGGGAAAGTTAGGAGGAGAAGAGAAGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGCTAACAATTGATGATAATCTATTGGTTGACCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTATGGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGCTTCTCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCCTTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTGAAACCTGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCAGATTTTGGCCTCGCTAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACGTACCGTTGGATGGCACCAGAGCTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAATTGTTCTATGGGAGCTACTAACAAATCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCCAGCATACCAGATGATATATCTCCTGAACTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCACTCTCTCACCACCATCTCCTCCTTTGCCAGTACCTAACCATGAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTTTCTGCCCGAAACAAAGGAAGGTTTGGTTTTCTTCGCCAATTGTTTTCTTCAAAGAGGACCAAAAACTAA 1110 0.427 MSFREGKLGGEEKECEESVLGSTESKSVRENGSLAATQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPVPNHEPEVATTSNGTITEFSARNKGRFGFLRQLFSSKRTKN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01175 369 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g01175 369 CDD STKc_MAP3K-like 58 313 - -
Viun5g01175 369 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 314 - -
Viun5g01175 369 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01175 369 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
Viun5g01175 369 Gene3D Phosphorylase Kinase; domain 1 41 131 - -
Viun5g01175 369 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Viun5g01175 369 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Viun5g01175 369 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Viun5g01175 369 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Viun5g01175 369 SUPERFAMILY Protein kinase-like (PK-like) 51 338 IPR011009 -
Viun5g01175 369 Gene3D Transferase(Phosphotransferase) domain 1 135 324 - -
Viun5g01175 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Viun5g01175 369 FunFam Kinase suppressor of Ras 1 41 131 - -
Viun5g01175 369 MobiDBLite consensus disorder prediction 1 27 - -
Viun5g01175 369 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01175 369 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01175 Viun-Chr5 8289839 8294388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01175 40 369 MAP Kinase Kinase Kinase AT5G01850 74.576 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun5g01175 PK_Tyr_Ser-Thr 1.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01175 - - jre:109021493 580.867