Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01170 ATGACGCAGCGGCGGTTTCTGGAGACGGAGCTGAGCATGCCGCCGTCGTACGGCAACAACACGCGCGACACGTTCATCAGCGACGCCAACTTCGACACCAACATGGTCATCATCCTGGCGGCTCTGCTGTGCGCGCTGATATGCGCGCTCGGGCTGAACTCCATCGCGCGGTGTGCTCTGCGGTGCGGGCGGCGCTTCGGCGACGAGACGGAGGAGCAGGCGGCGGCGCGCCTTGCCGGGACGGGACTGAAGCGGCGTGAGCTCAGCCGCATCCCGGTGGCGGTGTATGGTGCCTCCGGCGAGACCATCCCGGCCACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTCCGAATGCTTCCCAAGTGCAACCACGGATTCCACGTGCACTGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGCCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCCGCGCCGGAGAGTGGGTCCCGCCGTAGGAGCGACGTCGTGGTAGTGGTGGAGCCGCCGAGTTGA 537 0.6648 MTQRRFLETELSMPPSYGNNTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETEEQAAARLAGTGLKRRELSRIPVAVYGASGETIPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPAAPESGSRRRSDVVVVVEPPS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01170 178 PANTHER RING-H2 FINGER PROTEIN ATL78 12 158 IPR044602 GO:0016567|GO:0016740
Viun5g01170 178 SUPERFAMILY RING/U-box 101 157 - -
Viun5g01170 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Viun5g01170 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Viun5g01170 178 SMART ring_2 108 149 IPR001841 -
Viun5g01170 178 CDD RING-H2_EL5-like 107 150 - -
Viun5g01170 178 Pfam Ring finger domain 107 150 IPR001841 -
Viun5g01170 178 SMART FANCL_C_2 104 157 - -
Viun5g01170 178 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01170 Viun-Chr5 8227925 8229321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01170 5 174 C3H Transcription Factor Family AT3G10910 54.494 1.19e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01170 K19040 - gmx:100814602 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01170 5 8227925 8229321 Viun5g01170 5 8227925 8229321 ECH