Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01163 ATGATGCAATTCAGCGTGTGTGTGTTGTTTTTTGTGGTTCTTCTTGCTCCGCTTATGTTGGTGGTTTCTGGGGACACTGGTTTCAATGATGATGTGTTGGGTTTGATCGTGTTCAAGGCTGGTTTGGAAGATCCCAAAAGGAAACTCTCTTCGTGGAATGAGGATGATAACAGTCCTTGCAATTGGGAGGGTGTGAAGTGTGATCCTTCATCGAATAGGGTCACTGCTCTTGTTCTTGACGGGTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTATTGAGGTTGCAGTTCCTTCAAATTCTCTCCCTTTCAAGGAACAACTTCACAGGGCCCATAAACCCTGATCTTCCTGGCCTTGGGAATTTACAAACTGTGGACTTCAGTGACAACAACCTCTCTGGGGAGATCCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGGACAGTTTCATTTGCCAAGAACAACCTCACAGGTAAAATTCCAGAGTCCTTGAGTTCCTGCTCCAATTTGGCAACTGTTAACTTCTCCTCTAATCAGCTCCACGGGGAATTGCCTAATGGAGTGTGGTTCTTGAGGGGGCTACAGTCACTTGATCTGTCATACAACATGCTGGAGGGAGAAATTCCTGAAGGCATTCAGAATCTGTATGATATGAGAGAGTTGAGTCTTCAGAGGAACAGGTTTAGGGGAAGGCTTCCTGCGGATATTGGAGGATGCTTACTTCTGAAATCACTTGACTTGAGTGGTAATTTTCTCTCTGGGGAACTCCCTCAGTCAATGCAGAGACTCACTTCTTGCACATCACTTAGTTTGCAGGGAAATTCATTCACAGGGGGCATTCCTGAGTGGATTGGGGAATTGAAGAATCTAGACATGTTGGATCTTTCTGCCAATTCATTTTCTGGTTGGATTCCTAAGTCATTAGGAAATCTTGACTCTTTGCATAGATTGAACTTGTCCAGGAATCAGTTCACAGGAAACCTGCCTGATTCTATGCTGAATTGCACCAAGCTTTTGGCTCTTGACATCAGCCACAATCACTTGGCAGGCCATGTTCCTTCATGGATTTTTAAGATGGGTGTGCAAAGCATATCTGTTTCTGGGAATGGCTTCAGCAAGGGCAATTATCCTGCACTTAAGTCCACACCTACATCTTATCATGGTCTTGAGGTTCTGGATTTGTCATTCAATGCATTTTCTGGTGTGCTTCCATCTGACATTGGAGGACTCAGTAGCCTACAAGTCTTCAATATCTCTGCCAACAACATCTCTGGTCCTATTCCTGTGGGTATAGGTGAACTTAAGTCTTTGTACATTATTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAATTTCACTCAGGGAGCTAAGGCTGCAAAAGAACTTCCTAGGAGGAAAAATTCCAGCACAAATTGACAAGTGTTCATCTCTAACATTTTTGATTCTTTCTCACAACAAGCTCACTGGTCCAATCCCTGCAGCCATTGCAAACCTCACCAATCTTCAATACGTAGATTTGTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGTTAACAAATCTTTCTCATCTTTTCTCATTCAACGTGTCCAACAACCACCTTGAAGGTGAACTACCAGTGGGTGGCTTCTTCAACACCATCTCCTCCTCCTCAGTCTCCGGTAACCCATTGCTGTGCGGTTCTGTTGTCAACCACTCTTGTCCATCTGTTCATCCCAAACCTATTGTCCTGAACCCCAATTCTTCAGGTTCCAACTCCAGCATTTCCTCACAGACCCATCGGCACAAAATCATACTAAGTATCTCTGCTCTTATTGCTATTGGAGCTGCTGCTTTTATCGCCATTGGTGTGGTGGCTGTTACTGTCCTAAACATCCACGTGCGTTCCTCAATGGAACGTATGCCTGCTACATTTGCAATGTCCGGGGGAGAGGACTATAGTGGTTCGCCTGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCGCATAATCTTCTCAATAAGGAAAGTGAAATAGGCCGAGGTGGATTCGGAGTTGTTTATCGCACTTTTCTTCGCGATGGACACGCAGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAGGAAGACTTTGAGAGAGAAATCAAAAAGCTTGGAAAGATCAGGCACTCCAATCTCGTGGCACTTGAAGGCTATTACTGGACATCATCCTTGCAACTCCTTATTTATGAGTACCTCTCAACTGGGAGTTTGCATAAACTTCTGCATGATGATAGCAGCAAAAACGTCTTCTCATGGCCACAAAGGTTCAAGATTATTCATGGCATGGCAAAAGGGTTGGCCCATTTGCATCAAATGAACATAATCCACTACAATCTTAAGTCAACCAATGTTCTCATTGATTGTTCCGGTGAGCCAAAGGTTGGAGATTTTGGCTTGGTGAAACTACTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTCGGATACATGGCGCCGGAGTTTGCTTGCCGGACGGTTAAGATCACGGAGAAGTGTGACATATATGGTTTTGGTATCCTTGTGCTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGATGATGTAGTGGTTCTGTGTGACATGGTTAGGGGTGCATTGGAAGAAGGCAAGGTGGAACAATGTGTTGATAGAAGACTTCTTGGTAACTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTAGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGCTGAGGTAGTCAACATACTAGAATTAATCCAATGTCCTTCAGAAGGACAAGAAGAATTAGAATGA 2910 0.4423 MMQFSVCVLFFVVLLAPLMLVVSGDTGFNDDVLGLIVFKAGLEDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGPINPDLPGLGNLQTVDFSDNNLSGEIPEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLATVNFSSNQLHGELPNGVWFLRGLQSLDLSYNMLEGEIPEGIQNLYDMRELSLQRNRFRGRLPADIGGCLLLKSLDLSGNFLSGELPQSMQRLTSCTSLSLQGNSFTGGIPEWIGELKNLDMLDLSANSFSGWIPKSLGNLDSLHRLNLSRNQFTGNLPDSMLNCTKLLALDISHNHLAGHVPSWIFKMGVQSISVSGNGFSKGNYPALKSTPTSYHGLEVLDLSFNAFSGVLPSDIGGLSSLQVFNISANNISGPIPVGIGELKSLYIIDLSDNKLNGSIPSEIEGAISLRELRLQKNFLGGKIPAQIDKCSSLTFLILSHNKLTGPIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLFSFNVSNNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQTHRHKIILSISALIAIGAAAFIAIGVVAVTVLNIHVRSSMERMPATFAMSGGEDYSGSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREIKKLGKIRHSNLVALEGYYWTSSLQLLIYEYLSTGSLHKLLHDDSSKNVFSWPQRFKIIHGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDRRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGQEELE 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01163 969 SMART LRR_sd22_2 192 215 - -
Viun5g01163 969 SMART LRR_sd22_2 507 533 - -
Viun5g01163 969 SMART LRR_sd22_2 288 314 - -
Viun5g01163 969 SMART LRR_sd22_2 435 458 - -
Viun5g01163 969 SUPERFAMILY L domain-like 47 373 - -
Viun5g01163 969 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Viun5g01163 969 Gene3D Ribonuclease Inhibitor 308 583 IPR032675 -
Viun5g01163 969 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 680 762 - -
Viun5g01163 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 29 307 - -
Viun5g01163 969 Pfam Protein kinase domain 687 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01163 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 308 581 - -
Viun5g01163 969 CDD STKc_IRAK 692 958 - -
Viun5g01163 969 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515
Viun5g01163 969 Pfam Leucine Rich Repeat 243 263 IPR001611 GO:0005515
Viun5g01163 969 SMART LRR_typ_2 312 336 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 192 215 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 216 240 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 119 143 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 531 555 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 288 311 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 435 459 IPR003591 -
Viun5g01163 969 SMART LRR_typ_2 507 530 IPR003591 -
Viun5g01163 969 Pfam Leucine rich repeat 485 544 IPR001611 GO:0005515
Viun5g01163 969 Pfam Leucine rich repeat 268 325 IPR001611 GO:0005515
Viun5g01163 969 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Viun5g01163 969 Gene3D Ribonuclease Inhibitor 28 307 IPR032675 -
Viun5g01163 969 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 763 964 - -
Viun5g01163 969 Gene3D Phosphorylase Kinase; domain 1 676 762 - -
Viun5g01163 969 SUPERFAMILY L domain-like 288 562 - -
Viun5g01163 969 SUPERFAMILY Protein kinase-like (PK-like) 687 959 IPR011009 -
Viun5g01163 969 ProSiteProfiles Protein kinase domain profile. 686 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01163 969 Gene3D Transferase(Phosphotransferase) domain 1 763 967 - -
Viun5g01163 969 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 192 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01163 Viun-Chr5 8172399 8176641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01163 12 966 Receptor kinase-like Gene Family AT5G01890 61.929 0.0 1127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Viun5g01163 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01163 - - gmx:100790365 1731.46