Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01156 ATGGACAACCTTAGCGGTTCTACTAGTCGTAAGAAAGCAATCGAGGAGCTTCTCAGAGGTCGTGATTCTGCTACACAGCTCAGGAGTGTCATCAATGGGAATGGTGAAGATCTTTCTTCAGCAAAGAAACTCGTGAAGGAGGTGCTCATGTCCTTCACCAACTCCCTCTTGCTCTTGAACACCAGCAACACCACTTCTGAATTTCACGACGATGTCTCCAATGTTCAGCTTTGGGACTCTCCCAAACTCGAGGACTCTCAAGAGAGCAATTGCAAGAACTCCACAGTTAAAGCTCGAAGGGGGTGCTACAAGAGAAGAAGAACTGAACAAACAAGAGAGAAGGAGTCTAAAGCTCCAATCGATGATGGCCACCAATGGAGGAAGTATGGTCAAAAAGAGATCCTCAATGCCAAATTCCCAAGGAACTACTATAGGTGCACTCACAGAGACCAGGGTTGCCAAGCAACAAAGCAGGTGCAAAGAGTTCAAGAGGATCCAATCTTGTACAAGACAATTTACTATGGTGAGCACAGTTGCAAGAGTTTGACAAACCCTGAGATCATACTTGATCCTATGTCTCCCTCATCTTCTTCCAAGTTTCTTAGCTTCAACAACTCCTTCCCTACCCCATCAAAACAAGATTGTCCCTTTCTCTCATCTTCCTTCCCTTCTTCATCTGTGAAAAGGGAATGCAAGGAAGAGATTCCTCCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGACCTCACCTTTGATGGTTCACCAAAGCATGTCACTCTATCATCTTCAACACTTGACTCAGAGTACAAGGCTGTCGACATTCCTGATGTCTTTGATGATGTCTTTGAACACTTCTTTGAATTTAGATAG 873 0.4444 MDNLSGSTSRKKAIEELLRGRDSATQLRSVINGNGEDLSSAKKLVKEVLMSFTNSLLLLNTSNTTSEFHDDVSNVQLWDSPKLEDSQESNCKNSTVKARRGCYKRRRTEQTREKESKAPIDDGHQWRKYGQKEILNAKFPRNYYRCTHRDQGCQATKQVQRVQEDPILYKTIYYGEHSCKSLTNPEIILDPMSPSSSSKFLSFNNSFPTPSKQDCPFLSSSFPSSSVKRECKEEIPPSTSSNDYLISSDLTFDGSPKHVTLSSSTLDSEYKAVDIPDVFDDVFEHFFEFR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01156 290 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 207 IPR044810 GO:0003700
Viun5g01156 290 ProSiteProfiles WRKY domain profile. 115 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01156 290 SUPERFAMILY WRKY DNA-binding domain 118 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01156 290 SMART WRKY_cls 120 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01156 290 Gene3D WRKY domain 88 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01156 290 Pfam WRKY DNA -binding domain 121 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01156 Viun-Chr5 8107601 8109548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01156 12 186 WRKY Transcription Factor Family AT3G56400 40.884 2.61e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g01156 WRKY 9.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01156 - - gmx:100170682 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01156 5 8107601 8109548 Viun5g01156 5 8107601 8109548 ECH
Viun5g01156 5 8107601 8109548 Viun10g00042 10 250663 252217 PCT