Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01148 ATGGCTTCTCTGCTTCCCACAACTGCAACAACACTTCAACATAATCGCACCATCTGCTTCTCTCCTCTCAAACTCAGCATCCCAATTACCATTTCCTTCTCAACAAACCGTTGCAAGAGTACTTCTGTAAAGTGCAATGCAGTTTTTGGTGATATTCCCAAAGACTTGTTGGAGACCACTTTTCACTTGGACCAGTTTTCTGTCTTCCAATCAGTGTTAGTGAAGTTTCAGAATGTAACTGAAGATTTATCAGACGTGCAGAGGTGGGGGTTTGTGGTACTTGCAGGGCTGACATGGGCCTATTTAACTGCGAGGCCGGGTGTCCTTGTGGGCGCCATTGATGCATTCCTTTTGGCCCCTATTCAACTGCTTTTGGACAGTTTATCTGGAAGAAGAAATCTTAAAAGGACTGATTTTCTTATTGGGGATAAACTAGGAGAAGGGTCTTTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGCACAAGAGTTGATGCAAAAAAATGGAAGAGACAAGGTGAAAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCGGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCCCGAGCAGCTCCCGAAACATGTGCCAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACCAATTCACAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGATCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCATCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTGCAGGGTGTAGACTCTTCTAAACGAAATGCACTAATCATCAAGCAAATAATGCGCCAGATCATTACTTCTCTTAAGAAAATTCACGACACTGGAATTGTTCATAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCAAACGGGGGCAGATTAAACTCATCGATTTTGGTTCTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCTTACCCCTTTGGATCGTGACTACTGTCCCCCTGAACTGTATGTTCTACCAGAAGAAACCCTGAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAAGAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATAGCAATTCCAACCTTAAGATCTTCAGCTGCTTTGAAGAATTTCAATTTGGAGATAAGAACATGTGGATATGATTTGAACAAATGGAGAGCCTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTGGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGATGTTCCCAATTAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAGGCCGCTGCAGTCCTTTCAAAACTAAGCTTTTAA 1497 0.4262 MASLLPTTATTLQHNRTICFSPLKLSIPITISFSTNRCKSTSVKCNAVFGDIPKDLLETTFHLDQFSVFQSVLVKFQNVTEDLSDVQRWGFVVLAGLTWAYLTARPGVLVGAIDAFLLAPIQLLLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVLVPKNVDAQELMQKNGRDKVKKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMADQSFPSNLESTMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGSATDLRIGKNYVPNLTPLDRDYCPPELYVLPEETLSLPPEPIAAFLSPIMWQLKSPDLFDMYSAGIVLLQIAIPTLRSSAALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSGRGWDLATKLISKRCSQLRGRLSAAAALRHPYFLLGGDQAAAVLSKLSF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01148 498 SMART serkin_6 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01148 498 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01148 498 Gene3D Phosphorylase Kinase; domain 1 127 249 - -
Viun5g01148 498 ProSiteProfiles Protein kinase domain profile. 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01148 498 SUPERFAMILY Protein kinase-like (PK-like) 136 483 IPR011009 -
Viun5g01148 498 Gene3D Transferase(Phosphotransferase) domain 1 278 484 - -
Viun5g01148 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Viun5g01148 498 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 48 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01148 Viun-Chr5 8050945 8055456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01148 139 338 MAP Kinase Kinase Kinase AT3G13530 25.123 2.26e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Viun5g01148 Pkinase 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01148 - - gmx:100795624 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01148 5 8050945 8055456 Viun5g01148 5 8050945 8055456 ECH