Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01132 ATGCCGGCTCTAAGAATTCATGGACATGCCTTTGCTATTTTGTGTTGTTTTATCATCCTTACAGAAGCTTCTCAAACAGCCCCTTCAGAAGTAAATGCACTGATTGACATCAAGAAAAGTTTGATTGATCCTAAGAACAATCTGAGGAACTGGAATTCGGGTGACCCATGTATGGCAAACTGGACTGGGGTTCATTGTTTTGATAGGGCGGAGGCTGATGGTTACTTCCATGTCCAAAAGCTCTACTTAATGACTATGAATCTGTCGGGAAGTTTAGCCCCACAGCTTGGTCAGCTATCTCATCTTCAGATACTGTCTTTCATGTGGAACAATTTGACAGGCACAATACCGAAGGAAATTGGAAATGTCTTGCCATTGGAACTCTTGCTCCTAAGTGGGAATAAGTTATCTGGTAATTTACCAGATGAGCTTGGCAACCTTTGGAATTTGGATAGACTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATTCCGGAGTCATTTGGCAACATGGCCAAAGTTAAACATCTCCACATGAATAACAACTCGTTTTGTTGTCAACTTCCTTCCACACTTTCAAATCTGTCTAATCTCGTGCATTTGCTTGTGGACAACAATAACCTATCTGGTAACCTTCCACCAGGTTTCTCTGTCTTGCAACGGTTAAGAATACTCCAACTTGATAACAATAATTTCAATGGGAATGAAATTCCTTTTACCTATGGAAACTTCTCCGGTCTAGTGAAATTAAGTCTGAGAAACTGCAATCTGCAAGGAACTATTCCTGATTTCAGTTCAATAACCAACCTTAGCTATTTTGATCTATCCAATAATCTTCTCGAAGGACCAATTCCTCTAAGCTTCATATACCCCAATCTTCAAAAACTGTCACTTGAGAACAATTTGCTAAATGGATCAATCCCTGCTAGCATATGGCAGGACAGGGCCTTCAATACTGAAGACAAACTTAAAATCAATCTCGAAAATAACTCACTAGTCAACGTTTTGGGAAATCTGAACCCCCCAGCAAATGTTACCTTGAGGCTTTATGGCAATACAGTCTGCGACAATTCTAACATAGAAAATATTGGTCAATATTGTGGACCTGGAGGAGATGAAGAACATGAAGTAGTCAAAGACCCAAATAATGCATCAAGTGTGTGTCTAATTCAAGATTGCCAAGCAGATAATTCATATGAATTATATGTACCCTCTTTCCCAATTCCTTGCTATTGTGCAGCTCCTCTGATAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATTTTGCAATGTTTGTAATATATGTAACTGATTCCTTAAGCTTAGAACACTATCAGTTATCAATATCTGCTTGGGAAGATGGAAACCGTATAACCATGTATTTAAAACTATTCCCTTCATATGATTCCCACTTAAATATGTTCAACGAAAGTGAGGTCGATCGTATTAAAACCACATTTACATCATGGCGATTTCCTCCCAATCATTTCTTTGGACCATATGAACTCCTGAGCTTCACTCTTGTTGGACCTTATACAGCTACTACTGATTCAAAGAGGGGTAGATCTAATTCACTCATATTGGTTGCTGCTATAATATCAGCTGTTGCTAGTATAGCAACATCTGCTCTAATCATTTTCCTGCTTTTTAGAAGACGTGCAAAATATCTGAATAGGAGTTCAAGGAAACTTAAGTCCCCTAGTGTACACATTAAAATAGACAGTGTGAAAGAATTTACTTTCATAGAACTGGCTATTGCTACGAACAATTTTAGCAGCTCAAGTATAATTGGCAAAGGAGGTTATGGGGATGTCCATAAAGGCATTTTGTCAGGGGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGATTCCTTACAAGGCCAAAAGGAGTTTTTGACTGAGATTGAACTTTTATCAAGGTTACACCACCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGAGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTGAAAAAGCCAATGAAAGACAAGATTTTGGTATGAGGTTGAAAACTGCATTGGATGCAGCCAAAGGCGTACTATATCTTCATACAGAGGCTAACCCTCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTCTAGACTCCAAATTTACAGCTAAAGTAGCTGATTTTGGACTTTCACGGCTTGCATCAGAAGGATCTGGCACTAAATACATTTCAACTGTTGTGAAAGGAACACCAGGTTACCTTGACCCAGAATATGTATCGACTCATATGTTTACTGACAAAAGTGATATCTATAGCCTAGGAGTTGTGTTTCTGGAGCTTTTGACAGGGATGCAGCCAATCTCACGTGGGAAACACATTGTTACCGAGGTTAATGCGGCTTGTCGATCTGGCATGATATATTCCGTCATAGAGAGAAGAATGGGGTTATATCCCTCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCGAAGATAAACCAGAGGAGAGGCCATCAATTCTAGACGTGGTGAGGGAACTAGAAGATATTGCTGCAATGCTATCACAAAGTGATGAAGCCAGTTTCCCAGATGTTGCCATAGATAACTCAGGTGAAATGGCAACCTCATCATCTTTAGGATCTAATGCAGCAAGAGAGGATCAACACAAGTACGCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACCATTGTTCCTCGCTGA 2784 0.3994 MPALRIHGHAFAILCCFIILTEASQTAPSEVNALIDIKKSLIDPKNNLRNWNSGDPCMANWTGVHCFDRAEADGYFHVQKLYLMTMNLSGSLAPQLGQLSHLQILSFMWNNLTGTIPKEIGNVLPLELLLLSGNKLSGNLPDELGNLWNLDRLQVDENQLSGPIPESFGNMAKVKHLHMNNNSFCCQLPSTLSNLSNLVHLLVDNNNLSGNLPPGFSVLQRLRILQLDNNNFNGNEIPFTYGNFSGLVKLSLRNCNLQGTIPDFSSITNLSYFDLSNNLLEGPIPLSFIYPNLQKLSLENNLLNGSIPASIWQDRAFNTEDKLKINLENNSLVNVLGNLNPPANVTLRLYGNTVCDNSNIENIGQYCGPGGDEEHEVVKDPNNASSVCLIQDCQADNSYELYVPSFPIPCYCAAPLIIGYRLKSPSFSYFAPYFAMFVIYVTDSLSLEHYQLSISAWEDGNRITMYLKLFPSYDSHLNMFNESEVDRIKTTFTSWRFPPNHFFGPYELLSFTLVGPYTATTDSKRGRSNSLILVAAIISAVASIATSALIIFLLFRRRAKYLNRSSRKLKSPSVHIKIDSVKEFTFIELAIATNNFSSSSIIGKGGYGDVHKGILSGETLVAIKRAAEDSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEEEQMLVYEFMPNGTLRDWISGKSEKANERQDFGMRLKTALDAAKGVLYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLASEGSGTKYISTVVKGTPGYLDPEYVSTHMFTDKSDIYSLGVVFLELLTGMQPISRGKHIVTEVNAACRSGMIYSVIERRMGLYPSDCLDKFLTLALRCCEDKPEERPSILDVVRELEDIAAMLSQSDEASFPDVAIDNSGEMATSSSLGSNAAREDQHKYAYVSGSNLVSGVIPTIVPR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01132 927 CDD STKc_IRAK 602 867 - -
Viun5g01132 927 FunFam Leucine-rich repeat protein kinase family protein 560 671 - -
Viun5g01132 927 Gene3D Phosphorylase Kinase; domain 1 567 671 - -
Viun5g01132 927 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Viun5g01132 927 SUPERFAMILY Protein kinase-like (PK-like) 570 864 IPR011009 -
Viun5g01132 927 ProSiteProfiles Protein kinase domain profile. 596 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01132 927 Gene3D Transferase(Phosphotransferase) domain 1 672 886 - -
Viun5g01132 927 SUPERFAMILY L domain-like 25 311 - -
Viun5g01132 927 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 672 879 - -
Viun5g01132 927 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 28 189 - -
Viun5g01132 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Viun5g01132 927 PANTHER RECEPTOR-LIKE PROTEIN 55 37 868 - -
Viun5g01132 927 SMART serkin_6 596 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01132 927 Pfam Protein kinase domain 598 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01132 927 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Viun5g01132 927 Gene3D Ribonuclease Inhibitor 190 365 IPR032675 -
Viun5g01132 927 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01132 Viun-Chr5 7920144 7933880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01132 5 867 Receptor kinase-like Gene Family AT5G01950 55.072 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Viun5g01132 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01132 - - vum:124833501 1432.54