LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g01131	ATGCCGGCTCTAAGAATTCATGGACATGCCTTTGCTATTTTGTGTTGTTTTATCATCCTTACAGAAGCTTCTCAAACAGCCCCTTCAGAAGTAAATGCACTGATTGACATCAAGAAAAGTTTGATTGATCCTAAGAACAATCTGAGGAACTGGAATTCGGGTGACCCATGTATGGCAAACTGGACTGGGGTTCATTGTTTTGATAGGGCGGAGGCTGATGGTTACTTCCATGTCCAAAAGCTCTACTTAATGACTATGAATCTGTCGGGAAGTTTAGCCCCACAGCTTGGTCAGCTATCTCATCTTCAGATACTGTCTTTCATGTGGAACAATTTGACAGGCACAATACCGAAGGAAATTGGAAATGTCTTGCCATTGGAACTCTTGCTCCTAAGTGGGAATAAGTTATCTGGTAATTTACCAGATGAGCTTGGCAACCTTTGGAATTTGGATAGACTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATTCCGGAGTCATTTGGCAACATGGCCAAAGTTAAACATCTCCACATGAATAACAACTCGTTTTGTTGTCAACTTCCTTCCACACTTTCAAATCTGTCTAATCTCGTGCATTTGCTTGTGGACAACAATAACCTATCTGGTAACCTTCCACCAGGTTTCTCTGTCTTGCAACGGTTAAGAATACTCCAACTTGATAACAATAATTTCAATGGGAATGAAATTCCTTTTACCTATGGAAACTTCTCCGGTCTAGTGAAATTAAGTCTGAGAAACTGCAATCTGCAAGGAACTATTCCTGATTTCAGTTCAATAACCAACCTTAGCTATTTAGACCTTAGCAGGAATCAGTTTACTGGAACTATACCATCAAACAAACTTGCAGACAATATGACAACTATTGATCTATCCAATAATCTTCTCGAAGGACCAATTCCTCTAAGCTTCATATACCCCAATCTTCAAAAACTGTCACTTGAGAACAATTTGCTAAATGGATCAATCCCTGCTAGCATATGGCAGGACAGGGCCTTCAATACTGAAGACAAACTTAAAATCAATCTCGAAAATAACTCACTAGTCAACGTTTTGGGAAATCTGAACCCCCCAGCAAATGTTACCTTGAGGCTTTATGGCAATACAGTCTGCGACAATTCTAACATAGAAAATATTGGTCAATATTGTGGACCTGGAGGAGATGAAGAACATGAAGTAGTCAAAGACCCAAATAATGCATCAAGTGTGTGTCTAATTCAAGATTGCCAAGCAGATAATTCATATGAATTATATGTACCCTCTTTCCCAATTCCTTGCTATTGTGCAGCTCCTCTGATAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATTTTGCAATGTTTGTAATATATGTAACTGATTCCTTAAGCTTAGAACACTATCAGTTATCAATATCTGCTTGGGAAGATGGAAACCGTATAACCATGTATTTAAAACTATTCCCTTCATATGATTCCCACTTAAATATGTTCAACGAAAGTGAGGTCGATCGTATTAAAACCACATTTACATCATGGCGATTTCCTCCCAATCATTTCTTTGGACCATATGAACTCCTGAGCTTCACTCTTGTTGGACCTTATACAGCTACTACTGATTCAAAGAGGGGTAGATCTAATTCACTCATATTGGTTGCTGCTATAATATCAGCTGTTGCTAGTATAGCAACATCTGCTCTAATCATTTTCCTGCTTTTTAGAAGACGTGCAAAATATCTGAATAGGAGTTCAAGGAAACTTAAGTCCCCTAGTGTACACATTAAAATAGACAGTGTGAAAGAATTTACTTTCATAGAACTGGCTATTGCTACGAACAATTTTAGCAGCTCAAGTATAATTGGCAAAGGAGGTTATGGGGATGTCCATAAAGGCATTTTGTCAGGGGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGATTCCTTACAAGGCCAAAAGGAGTTTTTGACTGAGATTGAACTTTTATCAAGGTTACACCACCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGAGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTGAAAAAGCCAATGAAAGACAAGATTTTGGTATGAGGTTGAAAACTGCATTGGATGCAGCCAAAGGCGTACTATATCTTCATACAGAGGCTAACCCTCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTCTAGACTCCAAATTTACAGCTAAAGTAGCTGATTTTGGACTTTCACGGCTTGCATCAGAAGGATCTGGCACTAAATACATTTCAACTGTTGTGAAAGGAACACCAGGTTACCTTGACCCAGAATATGTATCGACTCATATGTTTACTGACAAAAGTGATATCTATAGCCTAGGAGTTGTGTTTCTGGAGCTTTTGACAGGGATGCAGCCAATCTCACGTGGGAAACACATTGTTACCGAGGTTAATGCGGCTTGTCGATCTGGCATGATATATTCCGTCATAGAGAGAAGAATGGGGTTATATCCCTCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCGAAGATAAACCAGAGGAGAGGCCATCAATTCTAGACGTGGTGAGGGAACTAGAAGATATTGCTGCAATGCTATCACAAAGTGATGAAGCCAGTTTCCCAGATGTTGCCATAGATAACTCAGGTGAAATGGCAACCTCATCATCTTTAGGATCTAATGCAGCAAGAGAGGATCAACACAAGTACGCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACCATTGTTCCTCGCTGA	2853	0.3985	MPALRIHGHAFAILCCFIILTEASQTAPSEVNALIDIKKSLIDPKNNLRNWNSGDPCMANWTGVHCFDRAEADGYFHVQKLYLMTMNLSGSLAPQLGQLSHLQILSFMWNNLTGTIPKEIGNVLPLELLLLSGNKLSGNLPDELGNLWNLDRLQVDENQLSGPIPESFGNMAKVKHLHMNNNSFCCQLPSTLSNLSNLVHLLVDNNNLSGNLPPGFSVLQRLRILQLDNNNFNGNEIPFTYGNFSGLVKLSLRNCNLQGTIPDFSSITNLSYLDLSRNQFTGTIPSNKLADNMTTIDLSNNLLEGPIPLSFIYPNLQKLSLENNLLNGSIPASIWQDRAFNTEDKLKINLENNSLVNVLGNLNPPANVTLRLYGNTVCDNSNIENIGQYCGPGGDEEHEVVKDPNNASSVCLIQDCQADNSYELYVPSFPIPCYCAAPLIIGYRLKSPSFSYFAPYFAMFVIYVTDSLSLEHYQLSISAWEDGNRITMYLKLFPSYDSHLNMFNESEVDRIKTTFTSWRFPPNHFFGPYELLSFTLVGPYTATTDSKRGRSNSLILVAAIISAVASIATSALIIFLLFRRRAKYLNRSSRKLKSPSVHIKIDSVKEFTFIELAIATNNFSSSSIIGKGGYGDVHKGILSGETLVAIKRAAEDSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEEEQMLVYEFMPNGTLRDWISGKSEKANERQDFGMRLKTALDAAKGVLYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLASEGSGTKYISTVVKGTPGYLDPEYVSTHMFTDKSDIYSLGVVFLELLTGMQPISRGKHIVTEVNAACRSGMIYSVIERRMGLYPSDCLDKFLTLALRCCEDKPEERPSILDVVRELEDIAAMLSQSDEASFPDVAIDNSGEMATSSSLGSNAAREDQHKYAYVSGSNLVSGVIPTIVPR	950

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g01131	950	ProSitePatterns	Protein kinases ATP-binding region signature.	625	647	IPR017441	GO:0005524
	Viun5g01131	950	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	695	902	-	-
	Viun5g01131	950	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	218	307	-	-
	Viun5g01131	950	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	28	189	-	-
	Viun5g01131	950	Gene3D	Ribonuclease Inhibitor	29	188	IPR032675	-
	Viun5g01131	950	ProSiteProfiles	Protein kinase domain profile.	619	894	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01131	950	Gene3D	Transferase(Phosphotransferase) domain 1	695	909	-	-
	Viun5g01131	950	SUPERFAMILY	L domain-like	25	286	-	-
	Viun5g01131	950	Pfam	Protein kinase domain	621	885	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01131	950	FunFam	receptor-like protein kinase FERONIA	582	694	-	-
	Viun5g01131	950	PANTHER	RECEPTOR-LIKE PROTEIN 55	37	891	-	-
	Viun5g01131	950	Gene3D	Phosphorylase Kinase; domain 1	590	694	-	-
	Viun5g01131	950	SMART	serkin_6	619	894	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01131	950	SUPERFAMILY	Protein kinase-like (PK-like)	593	887	IPR011009	-
	Viun5g01131	950	Pfam	Leucine rich repeat N-terminal domain	28	66	IPR013210	-
	Viun5g01131	950	CDD	STKc_IRAK	625	890	-	-
	Viun5g01131	950	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	742	754	IPR008271	GO:0004672\|GO:0006468
	Viun5g01131	950	Gene3D	Ribonuclease Inhibitor	189	386	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g01131	Viun-Chr5	7920144	7933880	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g01131	5	890	Receptor kinase-like Gene Family	AT5G01950	56.745	0.0	981

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Viun5g01131		Pkinase	5.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g01131	-		-	vum:124833501	1492.25