Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01116 ATGGAACCCAACAACGCAGACGCTTTCCGACCTTCTTCTTCACCCTCCGCTTCCCCCAACGCCAGGAGAATTTCCGGGATTTTGTCGCCCACAAATATCATTCAGGCTCCGTTATCGGCGCTGTTGGAATATTCCGGTATCCTTCCGTCGCGCTCGTCTAACCACCACAGCCAGCCAGCCCCTGACGCCGTTAACAATGACGGAGAGGTTTCGATCAGGATCATCGGCCCCGCGGAGCAGGAGCAGCAACCCCGGGAGGAACAGCATAGCCCTCCTGCCGCTTCGGGATTGGTCGTGGGACTCGCGCATTCGCAAAACGATGCCGTGTTGCCCTCGTCGTCGCCGCGCAGCGATGGTGCTGAGGAAAGCGCCGGCGCCGGAGGGGATGGCGTTGGGAGAGACTCCTCTTACCAGAGATACGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGTTTTTTCGTGACAATTTGGATTGCGGCTGTGCTTTTCAAGTCGAATGATATTATGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCTTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCATGCGATTTTCATCATCATGGTCAATGATACTTTGGTCCGCCAAGCTGCAATGGTAGTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTCCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTAAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTATGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTGCTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTTAGGTCATTTGGAGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1296 0.4869 MEPNNADAFRPSSSPSASPNARRISGILSPTNIIQAPLSALLEYSGILPSRSSNHHSQPAPDAVNNDGEVSIRIIGPAEQEQQPREEQHSPPAASGLVVGLAHSQNDAVLPSSSPRSDGAEESAGAGGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDIMRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVVKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01116 431 Pfam Zinc finger, C3HC4 type (RING finger) 368 411 - -
Viun5g01116 431 CDD RING-HC_RNFT1-like 368 408 - -
Viun5g01116 431 ProSiteProfiles Zinc finger RING-type profile. 370 408 IPR001841 -
Viun5g01116 431 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 18 431 IPR044235 GO:0061630|GO:1904294
Viun5g01116 431 MobiDBLite consensus disorder prediction 7 23 - -
Viun5g01116 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 418 IPR013083 -
Viun5g01116 431 SMART ring_2 370 407 IPR001841 -
Viun5g01116 431 MobiDBLite consensus disorder prediction 1 23 - -
Viun5g01116 431 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Viun5g01116 431 SUPERFAMILY RING/U-box 362 413 - -
Viun5g01116 431 MobiDBLite consensus disorder prediction 108 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01116 Viun-Chr5 7771750 7775804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01116 11 431 C3H Transcription Factor Family AT5G01960 72.093 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01116 - K22379 gmx:100818546 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01116 5 7771750 7775804 Viun5g01116 5 7771750 7775804 ECH