Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01113 ATGGCTGCGAATTCTGGGAACATATCATTTGCATCGTCTCAATCTGGTTCACAGTCCCATGGGGACACTGATTCTGTCCACGTTGCAGTGTGTTCCCTTTGTCAAAAGGTCCTATCACATGATAATGAGATGGCAAGCGATCTTGCTAGCCATGGTGTGTGCGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACATTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTGAGGCACAACAGTTCTGAATCTGTGGATAATAGTTTCTCACAGCAGATTCCTCATGTTCTTAGTACGGTGAGACAATATCAATCACCTGCCTCTGGGGAGGATGATCAACTTCTGGATGGTGACACCCCAGCTTGGTCAATGCCATATGCTAGTACACACACTACCCCAAGTGGATCTAGAAGGTGGAGGCATGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGACGTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTATAGGGTTCCCCATGGTGAGACAGATTCTTTCTCTCACAGTGCTTATGGAGGCGACTCTGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCATGGCCAATGGATTTCAGATGAAGATGATGAAGAAGAGGATGAAGATGGGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGAAGAAGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGCCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCAGGGATCGCAATAATTGGGAACAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCATATAATCAGGGATACTTGGCAAGCTTTTGAGGATGCTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTGGATGCTAGACGTTTCGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCGGCTGTGTCTTTCATGAAAAATCTTCCCCGTGTAGTCATTGGCAAAGAACATGAGAAGCACGATGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCTGGCACTGAAGTAAATCAACTTCCCTGTTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAAGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATGGATGTCATAGATGATAGTTCCTCTGATGTTTCTGATGGAGATGAGTTGAATGAAGAGAATGGTAGTAGTGAAGATGTTAGCTCAGGTTCTACCGCAATTTCTTCTACAAGAAGAAGAGGAAGATGGCTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAGGGAAATAGACATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGCAGTACATGCTTATGCTGCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1704 0.436 MAANSGNISFASSQSGSQSHGDTDSVHVAVCSLCQKVLSHDNEMASDLASHGVCGDCKFLLLEDFGNHTFTQSSRRRLRGRLRHNSSESVDNSFSQQIPHVLSTVRQYQSPASGEDDQLLDGDTPAWSMPYASTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHGETDSFSHSAYGGDSDISMDTHSFVGTGVFNLPDEFDSDTDIDPMHAGHGQWISDEDDEEEDEDGEEEEEEEEEEDDDDDDDEEEEEDREWELAEAEEAEATARLQIFFTSSPSESRDRNNWEQRFNSTESEGMFSHIIRDTWQAFEDADLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMKNLPRVVIGKEHEKHDELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQMDVIDDSSSDVSDGDELNEENGSSEDVSSGSTAISSTRRRGRWLFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSGQNQHAVHAYAAPNQRESRSRRWWCPF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01113 567 Pfam Ring finger domain 390 431 IPR001841 -
Viun5g01113 567 MobiDBLite consensus disorder prediction 467 481 - -
Viun5g01113 567 SUPERFAMILY RING/U-box 370 437 - -
Viun5g01113 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 437 IPR013083 -
Viun5g01113 567 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 350 437 - -
Viun5g01113 567 ProSiteProfiles Zinc finger RING-type profile. 390 431 IPR001841 -
Viun5g01113 567 SMART ring_2 390 430 IPR001841 -
Viun5g01113 567 Coils Coil 235 255 - -
Viun5g01113 567 MobiDBLite consensus disorder prediction 233 274 - -
Viun5g01113 567 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g01113 567 MobiDBLite consensus disorder prediction 458 492 - -
Viun5g01113 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 238 435 - -
Viun5g01113 567 CDD RING-H2_PA-TM-RING 389 431 - -
Viun5g01113 567 MobiDBLite consensus disorder prediction 214 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01113 Viun-Chr5 7758889 7762142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01113 23 567 C3H Transcription Factor Family AT5G01980 42.857 4.35e-117 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01113 - - pvu:PHAVU_008G078700g 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01113 5 7758889 7762142 Viun5g01113 5 7758889 7762142 ECH