LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g01102	ATGGCTTCCAACAACCTCGTCTTTCTTATCTTTAGTTGTACCTTTGTTATTACCTTGTTGAACTTCCCAACCACGAAAGCACAGAACGAGGACAGGGTTTACTTTGAGTACCAAAACTGTAGTCCAAACAGAACATCTTCTACCAGCGCATATCAAAACAACTTGATAACCCTTCTCTCTTCCTTCACTTCCAACGCATCTGCAACGTTATTCTACAACACCACCATCCTCAGCAGAAACAACACGGTGTATGGTTTGTTCATGTGTAGGGGTGACATACCCTTACGCCTGTGCAAAGAATGCGTGGCCAACGCAACCGAGAAGTTATCTACAGACCCAGAATGTAAGAACTCCGTAGAGGCTGTGATGTGGTACGCTGAATGCAAGCTTCGGTATTCCAATGTGCCTTTCTTCTCCGTCGTGGCCACGTCTCCAGGAATTTTTCTTGTCAGCCCTAGCGATGTCACCACCAACTCCACAATCAGCTTCATGATCTTCTTGCGCGACGCAATGAACCGAACTGCAGAAGCAGCAGCGGTTTCGGATGCGAGGTTCTCGACAAAGGAAACAAACTTGTCTCATTCTCAGACTGTTTATACTCTCGCTCAGTGCACGCAAGATTTGTCTCCGCAGAACTGCAGAACTTGTCTTGCAGAAGCAATAAAAGATCTTCCAACGTGCTGTGATGGAAAACAAGGAGGGAGAGTTGTGTTTCCGAGTTGTAACATTTGGTACGAGATGTACCTTTTCTATGGCCTCATCACTGATAATCCACCACAAAGACTCGCTCCATCATCAGATGACAATAAGATAGGCAAAGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATTGATGGAACATCTATAGCCGTAAAAAGACTTTCAAGAAACTCTAAACAAGGTTTAGAGGAGTTCAAAAATGAAGTTATGTTGATAGCCAAACTCCAACATAGAAATTTAGTAGCTTTCAAGGGATTTTGTCTTGATGAGGAAGAGAAAATACTTATCTATGAATACGTACCAAACAAGAGTTTGGACTACTTCTTATTTGATACTAAACAAGAAGATTGTTTGACTTGGTCTGAGCGTTACAAAATCATAGAAGGGATTGCTAAAGGAATTCTATATTTACACGACCATTCTCGACTTAAAGTAATACATCGTGATCTTAAACCTAGTAATGTATTATTAGATGAAAATATGGATCCAAAAATTTCAGATTTTGGACTTGCTAGAATTGTTGAAAAAGACCAACAAGAAGGAAGTACAAAGAGAATTATTGGAACATATGGTTATATGTCTCCAGAGTATGCTATGTTTGGACAATTTTCTGAGAAATCAGATGTTTACAGTTTTGGAGTTATGATTCTCGAAATTATTAGTGGGAAAAAGAACATGGGTTCATATGAACCACATCGTATTGTTAATTATCTTTTAAATTTTGTTTGGGAGCACTGGAGGGATGAAACACCATTGAGTACATTAGATCCAAAGTTAAAAGGAAATCATTCTAATATTGAAGTCATTAGATGTGTTAAGATTGGTTTATTATGTGTTCAAGAAAATCCAGATGCTAGACCTACAATGTTGACAATTGTCTCATATCTTAATGGTCACTTAGTTGAATTGCCTTCTCCCCTAGAACCAACATTTTCTTTGGATCGAAGAACGAATCCAACTAATTCACAGAACCCAAGCTTGAGACAATTTGCTAACAATTTCATATCAGGCTCAATCAATGAGATGTCTATAAGTAAATTTTATCCTCGATAA	1776	0.388	MASNNLVFLIFSCTFVITLLNFPTTKAQNEDRVYFEYQNCSPNRTSSTSAYQNNLITLLSSFTSNASATLFYNTTILSRNNTVYGLFMCRGDIPLRLCKECVANATEKLSTDPECKNSVEAVMWYAECKLRYSNVPFFSVVATSPGIFLVSPSDVTTNSTISFMIFLRDAMNRTAEAAAVSDARFSTKETNLSHSQTVYTLAQCTQDLSPQNCRTCLAEAIKDLPTCCDGKQGGRVVFPSCNIWYEMYLFYGLITDNPPQRLAPSSDDNKIGKGGFGEVYKGILIDGTSIAVKRLSRNSKQGLEEFKNEVMLIAKLQHRNLVAFKGFCLDEEEKILIYEYVPNKSLDYFLFDTKQEDCLTWSERYKIIEGIAKGILYLHDHSRLKVIHRDLKPSNVLLDENMDPKISDFGLARIVEKDQQEGSTKRIIGTYGYMSPEYAMFGQFSEKSDVYSFGVMILEIISGKKNMGSYEPHRIVNYLLNFVWEHWRDETPLSTLDPKLKGNHSNIEVIRCVKIGLLCVQENPDARPTMLTIVSYLNGHLVELPSPLEPTFSLDRRTNPTNSQNPSLRQFANNFISGSINEMSISKFYPR	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g01102	591	Gene3D	-	148	250	IPR038408	-
	Viun5g01102	591	Gene3D	-	32	137	IPR038408	-
	Viun5g01102	591	FunFam	Cysteine-rich receptor-like protein kinase 25	146	250	-	-
	Viun5g01102	591	Gene3D	Transferase(Phosphotransferase) domain 1	341	544	-	-
	Viun5g01102	591	ProSitePatterns	Protein kinases ATP-binding region signature.	271	293	IPR017441	GO:0005524
	Viun5g01102	591	CDD	STKc_IRAK	271	539	-	-
	Viun5g01102	591	ProSiteProfiles	Gnk2-homologous domain profile.	143	250	IPR002902	-
	Viun5g01102	591	SMART	serkin_6	265	537	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01102	591	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	261	340	-	-
	Viun5g01102	591	Pfam	Salt stress response/antifungal	161	247	IPR002902	-
	Viun5g01102	591	Pfam	Salt stress response/antifungal	40	134	IPR002902	-
	Viun5g01102	591	FunFam	cysteine-rich receptor-like protein kinase 10	341	544	-	-
	Viun5g01102	591	Pfam	Protein tyrosine and serine/threonine kinase	269	536	IPR001245	GO:0004672\|GO:0006468
	Viun5g01102	591	SUPERFAMILY	Protein kinase-like (PK-like)	268	563	IPR011009	-
	Viun5g01102	591	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	266	586	-	-
	Viun5g01102	591	ProSiteProfiles	Gnk2-homologous domain profile.	33	137	IPR002902	-
	Viun5g01102	591	ProSiteProfiles	Protein kinase domain profile.	265	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01102	591	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	386	398	IPR008271	GO:0004672\|GO:0006468
	Viun5g01102	591	Gene3D	Phosphorylase Kinase; domain 1	265	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g01102	Viun-Chr5	7671126	7675694	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g01102	1	556	Receptor kinase-like Gene Family	AT4G04540	36.102	2.18e-127	386

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g01102		PK_Tyr_Ser-Thr	3.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g01102	-		-	mtr:25479483	650.973