LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g01101	ATGGCTTCCAACAACCTCGTCTTTCTTATCTTTAGTTGTACCTTTGTTATTACCTTGTTGAACTTCCCAACCACGAAAGCACAGAACGAGGACAGGGTTTACTTTGAGTACCAAAACTGTAGTCCAAACAGAACATCTTCTACCAGCGCATATCAAAACAACTTGATAACCCTTCTCTCTTCCTTCACTTCCAACGCATCTGCAACGTTATTCTACAACACCACCATCCTCAGCAGAAACAACACGGTGTATGGTTTGTTCATGTGTAGGGGTGACATACCCTTACGCCTGTGCAAAGAATGCGTGGCCAACGCAACCGAGAAGTTATCTACAGACCCAGAATGTAAGAACTCCGTAGAGGCTGTGATGTGGTACGCTGAATGCAAGCTTCGGTATTCCAATGTGCCTTTCTTCTCCGTCGTGGCCACGTCTCCAGGAATTTTTCTTGTCAGCCCTAGCGATGTCACCACCAACTCCACAATCAGCTTCATGATCTTCTTGCGCGACGCAATGAACCGAACTGCAGAAGCAGCAGCGGTTTCGGATGCGAGGTTCTCGACAAAGGAAACAAACTTGTCTCATTCTCAGACTGTTTATACTCTCGCTCAGTGCACGCAAGATTTGTCTCCGCAGAACTGCAGAACTTGTCTTGCAGAAGCAATAAAAGATCTTCCAACGTGCTGTGATGGAAAACAAGGAGGGAGAGTTGTGTTTCCGAGTTGTAACATTTGGTACGAGATGTACCTTTTCTATGGCCTCATCACTGATAATCCACCACAAAGACTCGCTCCATCATCAGTTGGACTTGGAAGTTCTACTATAGAGTCATTGCAATTCAGTTTGGCAATAATTGAAGTAGCAACAAACAACTTTGCAGATGACAATAAGATAGGCAAAGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATTGATGGAACATCTATAGCCGTAAAAAGACTTTCAAGAAACTCTAAACAAGGTTTAGAGGAGTTCAAAAATGAAGTTATGTTGATAGCCAAACTCCAACATAGAAATTTAGTAGCTTTCAAGGGATTTTGTCTTGATGAGGAAGAGAAAATACTTATCTATGAATACGTACCAAACAAGAGTTTGGACTACTTCTTATTTGATACTAAACAAGAAGATTGTTTGACTTGGTCTGAGCGTTACAAAATCATAGAAGGGATTGCTAAAGGAATTCTATATTTACACGACCATTCTCGACTTAAAGTAATACATCGTGATCTTAAACCTAGTAATGTATTATTAGATGAAAATATGGATCCAAAAATTTCAGATTTTGGACTTGCTAGAATTGTTGAAAAAGACCAACAAGAAGGAAGTACAAAGAGAATTATTGGAACATATGGTTATATGTCTCCAGAGTATGCTATGTTTGGACAATTTTCTGAGAAATCAGATGTTTACAGTTTTGGAGTTATGATTCTCGAAATTATTAGTGGGAAAAAGAACATGGGTTCATATGAACCACATCGTATTGTTAATTATCTTTTAAATTTTGTTTGGGAGCACTGGAGGGATGAAACACCATTGAGTACATTAGATCCAAAGTTAAAAGGAAATCATTCTAATATTGAAGTCATTAGATGTGTTAAGATTGGTTTATTATGTGTTCAAGAAAATCCAGATGCTAGACCTACAATGTTGACAATTGTCTCATATCTTAATGGTCACTTAGTTGAATTGCCTTCTCCCCTAGAACCAACATTTTCTTTGGATCGAAGAACGAATCCAACTAATTCACAGAACCCAAGCTTGAGACAATTTGCTAACAATTTCATATCAGGCTCAATCAATGAGATGTCTATAAGTAAATTTTATCCTCGATAA	1854	0.3867	MASNNLVFLIFSCTFVITLLNFPTTKAQNEDRVYFEYQNCSPNRTSSTSAYQNNLITLLSSFTSNASATLFYNTTILSRNNTVYGLFMCRGDIPLRLCKECVANATEKLSTDPECKNSVEAVMWYAECKLRYSNVPFFSVVATSPGIFLVSPSDVTTNSTISFMIFLRDAMNRTAEAAAVSDARFSTKETNLSHSQTVYTLAQCTQDLSPQNCRTCLAEAIKDLPTCCDGKQGGRVVFPSCNIWYEMYLFYGLITDNPPQRLAPSSVGLGSSTIESLQFSLAIIEVATNNFADDNKIGKGGFGEVYKGILIDGTSIAVKRLSRNSKQGLEEFKNEVMLIAKLQHRNLVAFKGFCLDEEEKILIYEYVPNKSLDYFLFDTKQEDCLTWSERYKIIEGIAKGILYLHDHSRLKVIHRDLKPSNVLLDENMDPKISDFGLARIVEKDQQEGSTKRIIGTYGYMSPEYAMFGQFSEKSDVYSFGVMILEIISGKKNMGSYEPHRIVNYLLNFVWEHWRDETPLSTLDPKLKGNHSNIEVIRCVKIGLLCVQENPDARPTMLTIVSYLNGHLVELPSPLEPTFSLDRRTNPTNSQNPSLRQFANNFISGSINEMSISKFYPR	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g01101	617	Gene3D	Phosphorylase Kinase; domain 1	264	366	-	-
	Viun5g01101	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	412	424	IPR008271	GO:0004672\|GO:0006468
	Viun5g01101	617	CDD	STKc_IRAK	297	565	-	-
	Viun5g01101	617	ProSiteProfiles	Protein kinase domain profile.	291	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01101	617	ProSiteProfiles	Gnk2-homologous domain profile.	143	250	IPR002902	-
	Viun5g01101	617	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	47	612	-	-
	Viun5g01101	617	SMART	serkin_6	291	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01101	617	Gene3D	Transferase(Phosphotransferase) domain 1	367	570	-	-
	Viun5g01101	617	SUPERFAMILY	Protein kinase-like (PK-like)	273	589	IPR011009	-
	Viun5g01101	617	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	255	366	-	-
	Viun5g01101	617	Gene3D	-	32	137	IPR038408	-
	Viun5g01101	617	Gene3D	-	148	250	IPR038408	-
	Viun5g01101	617	Pfam	Salt stress response/antifungal	40	134	IPR002902	-
	Viun5g01101	617	Pfam	Salt stress response/antifungal	161	247	IPR002902	-
	Viun5g01101	617	FunFam	cysteine-rich receptor-like protein kinase 10	367	570	-	-
	Viun5g01101	617	ProSitePatterns	Protein kinases ATP-binding region signature.	297	319	IPR017441	GO:0005524
	Viun5g01101	617	ProSiteProfiles	Gnk2-homologous domain profile.	33	137	IPR002902	-
	Viun5g01101	617	FunFam	Cysteine-rich receptor-like protein kinase 25	146	250	-	-
	Viun5g01101	617	Pfam	Protein tyrosine and serine/threonine kinase	295	562	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g01101	Viun-Chr5	7671126	7675694	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g01101	51	612	Receptor kinase-like Gene Family	AT4G11460	41.521	3.35e-152	453

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g01101		PK_Tyr_Ser-Thr	3.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g01101	-		-	gmx:102661673	853.973