Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01100 ATGGCTTCCAACAACCTCGTCTTTCTTATCTTTAGTTGTACCTTTGTTATTACCTTGTTGAACTTCCCAACCACGAAAGCACAGAACGAGGACAGGGTTTACTTTGAGTACCAAAACTGTAGTCCAAACAGAACATCTTCTACCAGCGCATATCAAAACAACTTGATAACCCTTCTCTCTTCCTTCACTTCCAACGCATCTGCAACGTTATTCTACAACACCACCATCCTCAGCAGAAACAACACGGTGTATGGTTTGTTCATGTGTAGGGGTGACATACCCTTACGCCTGTGCAAAGAATGCGTGGCCAACGCAACCGAGAAGTTATCTACAGACCCAGAATGTAAGAACTCCGTAGAGGCTGTGATGTGGTACGCTGAATGCAAGCTTCGGTATTCCAATGTGCCTTTCTTCTCCGTCGTGGCCACGTCTCCAGGAATTTTTCTTGTCAGCCCTAGCGATGTCACCACCAACTCCACAATCAGCTTCATGATCTTCTTGCGCGACGCAATGAACCGAACTGCAGAAGCAGCAGCGGTTTCGGATGCGAGGTTCTCGACAAAGGAAACAAACTTGTCTCATTCTCAGACTGTTTATACTCTCGCTCAGTGCACGCAAGATTTGTCTCCGCAGAACTGCAGAACTTGTCTTGCAGAAGCAATAAAAGATCTTCCAACGTGCTGTGATGGAAAACAAGGAGGGAGAGTTGTGTTTCCGAGTTGTAACATTTGGTACGAGATGTACCTTTTCTATGGCCTCATCACTGATAATCCACCACAAAGACTCGCTCCATCATCAGGAAAAGGTCTATCACGAACTATTATCTTGATTCTTATTTTCGCTATTGCTTTGGTGGGACTACTTTTTGGCATTTGTTGTTATATTTTGATGCGAAGAAAAACAAGAAAGAGTAATAACATTATACTTATAGAAAATCTTGGACTTGGAAGTTCTACTATAGAGTCATTGCAATTCAGTTTGGCAATAATTGAAGTAGCAACAAACAACTTTGCAGATGACAATAAGATAGGCAAAGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATTGATGGAACATCTATAGCCGTAAAAAGACTTTCAAGAAACTCTAAACAAGGTTTAGAGGAGTTCAAAAATGAAGTTATGTTGATAGCCAAACTCCAACATAGAAATTTAGTAGCTTTCAAGGGATTTTGTCTTGATGAGGAAGAGAAAATACTTATCTATGAATACGTACCAAACAAGAGTTTGGACTACTTCTTATTTGATACTAAACAAGAAGATTGTTTGACTTGGTCTGAGCGTTACAAAATCATAGAAGGGATTGCTAAAGGAATTCTATATTTACACGACCATTCTCGACTTAAAATTTTGGACTTGCTAGAATTGTTGAAAAAGACCAACAAGAAGGAAGTACAAAGAGAATTATTGGAACATAAGTATGCTATGTTTGGACAATTTTCTGAGAAATCAGATGTTTACAGTTTTGGAGTTATGATTCTCGAAATTATTAGTGGGAAAAAGAACATGGGTTCATATGAACCACATCGTATTGTTAATTATCTTTTAAATTTTGTTTGGGAGCACTGGAGGGATGAAACACCATTGAGTACATTAGATCCAAAGTTAAAAGGAAATCATTCTAATATTGAAGTCATTAGATGTGTTAAGATTGGTTTATTATGTGTTCAAGAAAATCCAGATGCTAGACCTACAATGTTGACAATTGTCTCATATCTTAATGGTCACTTAGTTGAATTGCCTTCTCCCCTAGAACCAACATTTTCTTTGGATCGAAGAACGAATCCAACTAATTCACAGAACCCAAGCTTGAGACAATTTGCTAACAATTTCATATCAGGCTCAATCAATGAGATGTCTATAAGTAAATTTTATCCTCGATAA 1908 0.3842 MASNNLVFLIFSCTFVITLLNFPTTKAQNEDRVYFEYQNCSPNRTSSTSAYQNNLITLLSSFTSNASATLFYNTTILSRNNTVYGLFMCRGDIPLRLCKECVANATEKLSTDPECKNSVEAVMWYAECKLRYSNVPFFSVVATSPGIFLVSPSDVTTNSTISFMIFLRDAMNRTAEAAAVSDARFSTKETNLSHSQTVYTLAQCTQDLSPQNCRTCLAEAIKDLPTCCDGKQGGRVVFPSCNIWYEMYLFYGLITDNPPQRLAPSSGKGLSRTIILILIFAIALVGLLFGICCYILMRRKTRKSNNIILIENLGLGSSTIESLQFSLAIIEVATNNFADDNKIGKGGFGEVYKGILIDGTSIAVKRLSRNSKQGLEEFKNEVMLIAKLQHRNLVAFKGFCLDEEEKILIYEYVPNKSLDYFLFDTKQEDCLTWSERYKIIEGIAKGILYLHDHSRLKILDLLELLKKTNKKEVQRELLEHKYAMFGQFSEKSDVYSFGVMILEIISGKKNMGSYEPHRIVNYLLNFVWEHWRDETPLSTLDPKLKGNHSNIEVIRCVKIGLLCVQENPDARPTMLTIVSYLNGHLVELPSPLEPTFSLDRRTNPTNSQNPSLRQFANNFISGSINEMSISKFYPR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01100 635 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 115 459 - -
Viun5g01100 635 SUPERFAMILY Protein kinase-like (PK-like) 319 606 IPR011009 -
Viun5g01100 635 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Viun5g01100 635 ProSiteProfiles Protein kinase domain profile. 337 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01100 635 Gene3D Phosphorylase Kinase; domain 1 299 412 - -
Viun5g01100 635 Gene3D Transferase(Phosphotransferase) domain 1 414 587 - -
Viun5g01100 635 ProSiteProfiles Gnk2-homologous domain profile. 33 137 IPR002902 -
Viun5g01100 635 Gene3D - 148 250 IPR038408 -
Viun5g01100 635 Gene3D - 32 137 IPR038408 -
Viun5g01100 635 Pfam Protein tyrosine and serine/threonine kinase 341 453 IPR001245 GO:0004672|GO:0006468
Viun5g01100 635 Pfam Protein tyrosine and serine/threonine kinase 485 580 IPR001245 GO:0004672|GO:0006468
Viun5g01100 635 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 298 412 - -
Viun5g01100 635 FunFam Cysteine-rich receptor-like protein kinase 25 146 250 - -
Viun5g01100 635 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Viun5g01100 635 Pfam Salt stress response/antifungal 161 247 IPR002902 -
Viun5g01100 635 Pfam Salt stress response/antifungal 40 134 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01100 Viun-Chr5 7671126 7675694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01100 22 635 Receptor kinase-like Gene Family AT4G05200 41.405 4.74e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g01100 PK_Tyr_Ser-Thr 6.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01100 - - gsj:114397380 796.964