LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g01099	ATGGCTTCCAACAACCTCGTCTTTCTTATCTTTAGTTGTACCTTTGTTATTACCTTGTTGAACTTCCCAACCACGAAAGCACAGAACGAGGACAGGGTTTACTTTGAGTACCAAAACTGTAGTCCAAACAGAACATCTTCTACCAGCGCATATCAAAACAACTTGATAACCCTTCTCTCTTCCTTCACTTCCAACGCATCTGCAACGTTATTCTACAACACCACCATCCTCAGCAGAAACAACACGGTGTATGGTTTGTTCATGTGTAGGGGTGACATACCCTTACGCCTGTGCAAAGAATGCGTGGCCAACGCAACCGAGAAGTTATCTACAGACCCAGAATGTAAGAACTCCGTAGAGGCTGTGATGTGGTACGCTGAATGCAAGCTTCGGTATTCCAATGTGCCTTTCTTCTCCGTCGTGGCCACGTCTCCAGGAATTTTTCTTGTCAGCCCTAGCGATGTCACCACCAACTCCACAATCAGCTTCATGATCTTCTTGCGCGACGCAATGAACCGAACTGCAGAAGCAGCAGCGGTTTCGGATGCGAGGTTCTCGACAAAGGAAACAAACTTGTCTCATTCTCAGACTGTTTATACTCTCGCTCAGTGCACGCAAGATTTGTCTCCGCAGAACTGCAGAACTTGTCTTGCAGAAGCAATAAAAGATCTTCCAACGTGCTGTGATGGAAAACAAGGAGGGAGAGTTGTGTTTCCGAGTTGTAACATTTGGTACGAGATGTACCTTTTCTATGGCCTCATCACTGATAATCCACCACAAAGACTCGCTCCATCATCAGGAAAAGGTCTATCACGAACTATTATCTTGATTCTTATTTTCGCTATTGCTTTGGTGGGACTACTTTTTGGCATTTGTTGTTATATTTTGATGCGAAGAAAAACAAGAAAGAGTAATAACATTATACTTATAGAAAATCTTGGACTTGGAAGTTCTACTATAGAGTCATTGCAATTCAGTTTGGCAATAATTGAAGTAGCAACAAACAACTTTGCAGATGACAATAAGATAGGCAAAGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATTGATGGAACATCTATAGCCGTAAAAAGACTTTCAAGAAACTCTAAACAAGGTTTAGAGGAGTTCAAAAATGAAGTTATGTTGATAGCCAAACTCCAACATAGAAATTTAGTAGCTTTCAAGGGATTTTGTCTTGATGAGGAAGAGAAAATACTTATCTATGAATACGTACCAAACAAGAGTTTGGACTACTTCTTATTTGATACTAAACAAGAAGATTGTTTGACTTGGTCTGAGCGTTACAAAATCATAGAAGGGATTGCTAAAGGAATTCTATATTTACACGACCATTCTCGACTTAAAGTAATACATCGTGATCTTAAACCTAGTAATGTATTATTAGATGAAAATATGGATCCAAAAATTTCAGATTTTGGACTTGCTAGAATTGTTGAAAAAGACCAACAAGAAGGAAGTACAAAGAGAATTATTGGAACATATGGTTATATGTCTCCAGAGTATGCTATGTTTGGACAATTTTCTGAGAAATCAGATGTTTACAGTTTTGGAGTTATGATTCTCGAAATTATTAGTGGGAAAAAGAACATGGGTTCATATGAACCACATCGTATTGTTAATTATCTTTTAAATTTTGTTTGGGAGCACTGGAGGGATGAAACACCATTGAGTACATTAGATCCAAAGTTAAAAGGAAATCATTCTAATATTGAAGTCATTAGATGTGTTAAGATTGGTTTATTATGTGTTCAAGAAAATCCAGATGCTAGACCTACAATGTTGACAATTGTCTCATATCTTAATGGTCACTTAGTTGAATTGCCTTCTCCCCTAGAACCAACATTTTCTTTGGATCGAAGAACGAATCCAACTAATTCACAGAACCCAAGCTTGAGACAATTTGCTAACAATTTCATATCAGGCTCAATCAATGAGATGTCTATAAGTAAATTTTATCCTCGATAA	1992	0.3805	MASNNLVFLIFSCTFVITLLNFPTTKAQNEDRVYFEYQNCSPNRTSSTSAYQNNLITLLSSFTSNASATLFYNTTILSRNNTVYGLFMCRGDIPLRLCKECVANATEKLSTDPECKNSVEAVMWYAECKLRYSNVPFFSVVATSPGIFLVSPSDVTTNSTISFMIFLRDAMNRTAEAAAVSDARFSTKETNLSHSQTVYTLAQCTQDLSPQNCRTCLAEAIKDLPTCCDGKQGGRVVFPSCNIWYEMYLFYGLITDNPPQRLAPSSGKGLSRTIILILIFAIALVGLLFGICCYILMRRKTRKSNNIILIENLGLGSSTIESLQFSLAIIEVATNNFADDNKIGKGGFGEVYKGILIDGTSIAVKRLSRNSKQGLEEFKNEVMLIAKLQHRNLVAFKGFCLDEEEKILIYEYVPNKSLDYFLFDTKQEDCLTWSERYKIIEGIAKGILYLHDHSRLKVIHRDLKPSNVLLDENMDPKISDFGLARIVEKDQQEGSTKRIIGTYGYMSPEYAMFGQFSEKSDVYSFGVMILEIISGKKNMGSYEPHRIVNYLLNFVWEHWRDETPLSTLDPKLKGNHSNIEVIRCVKIGLLCVQENPDARPTMLTIVSYLNGHLVELPSPLEPTFSLDRRTNPTNSQNPSLRQFANNFISGSINEMSISKFYPR	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g01099	663	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	298	412	-	-
	Viun5g01099	663	FunFam	Cysteine-rich receptor-like protein kinase 25	146	250	-	-
	Viun5g01099	663	FunFam	cysteine-rich receptor-like protein kinase 10	413	616	-	-
	Viun5g01099	663	Gene3D	Transferase(Phosphotransferase) domain 1	413	616	-	-
	Viun5g01099	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Viun5g01099	663	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	47	658	-	-
	Viun5g01099	663	SMART	serkin_6	337	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01099	663	ProSiteProfiles	Gnk2-homologous domain profile.	143	250	IPR002902	-
	Viun5g01099	663	Pfam	Protein tyrosine and serine/threonine kinase	341	608	IPR001245	GO:0004672\|GO:0006468
	Viun5g01099	663	Pfam	Salt stress response/antifungal	40	134	IPR002902	-
	Viun5g01099	663	Pfam	Salt stress response/antifungal	161	247	IPR002902	-
	Viun5g01099	663	Gene3D	Phosphorylase Kinase; domain 1	299	412	-	-
	Viun5g01099	663	ProSitePatterns	Protein kinases ATP-binding region signature.	343	365	IPR017441	GO:0005524
	Viun5g01099	663	Gene3D	-	32	137	IPR038408	-
	Viun5g01099	663	Gene3D	-	148	250	IPR038408	-
	Viun5g01099	663	SUPERFAMILY	Protein kinase-like (PK-like)	319	635	IPR011009	-
	Viun5g01099	663	ProSiteProfiles	Protein kinase domain profile.	337	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g01099	663	ProSiteProfiles	Gnk2-homologous domain profile.	33	137	IPR002902	-
	Viun5g01099	663	CDD	STKc_IRAK	343	611	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g01099	Viun-Chr5	7671126	7675694	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g01099	22	663	Receptor kinase-like Gene Family	AT4G05200	46.188	0.0	568

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g01099		PK_Tyr_Ser-Thr	3.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g01099	-		-	gsj:114397380	911.753