Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01094 ATGGGAGGCGAACGAAGTGCGGCGATGAAGAAGAAGAAGAACGCAAAATCTGGGGGCTTTGAGTCACTGGGTCTGAGTCCGAATGTGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTACCCACTCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCCGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCCGCGTTTCTTGTCCCCATGATTCACCGCCTCAACCAGCACGTTCCTCAGTCTGGAGTCAGAGCCCTGATCCTGTCCCCCACTAGGGACCTCGCCCTTCAGACTCTGAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTGTGAGTTTGTTAGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAGTTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCAGAGGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGAATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTTCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACACTACCCAGTGCTCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGATCCTCAGCTCGTTCGTCTCGACCTGGAGACTAGGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAAGAGGAGAAGTACCCCGCCCTGCTGTACTTGATCAGGGAACATATTGGCTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAATGTTTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGCGACATGGATCAGGATGCTCGCAAAATCCATGTATCCAAGTTTAGGGCTAGAAAGACCATGTTGTTGATTGTCACCGACGTGGCAGCTCGTGGCATTGACATTCCATTGCTTGATAATGTTGTCAATTGGGACTTCCCTCCCAAGCCTAAAATATTTGTCCATCGTGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCCAAACCCATCAAACCTGCTCCCTCTGAAGAAGAGCTCTTGCAGGATATGGATGGAGTAATGTCTAGATGTGACCAGGCAATGGCAAATAAAGAAACCATTTATGGTCGCTTCCCACAAAAAGTTATTGACCTTGTTTCAGACAGAATTAGGGAAGTTATTGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAGAAGAGTAAAGGATTTACCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAACAAACCATTTTGGAAGCTGAAGGAGAAGCAGCTAAATCAAAGCATCAACAGGAATGGGGCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCATGAACAACAGAAGTCTAAGGATAACAAGGAAAAGGAGGAAATCGAATCAGAAATCAGTCCTTCCATGGAGAAAGGGAAAAAAGCAGCACGTGGTTCTAAGAGAAAGACCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCCAATGACGACTTTGCTTCAAATAGATTGGACTCTGCGGTCCTTGATCTAGTCGCAGATGATGGTACTGGCATTCAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGAGTTGCTGCAAACGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAGCGCTCACACGGTAAGATATCACTTAGAGGGACAAATGATGGTGATTCTCATGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGCAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAGTTCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGAAAAAAGCCAATAGGACTTCTTATATCAAGAGCAAGTCGACCAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGAAGAAAAGGCAAATAG 2322 0.4543 MGGERSAAMKKKKNAKSGGFESLGLSPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHVPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILSQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSKFRARKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPSEEELLQDMDGVMSRCDQAMANKETIYGRFPQKVIDLVSDRIREVIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQEWGDVMKRKRAIHENIINLVHEQQKSKDNKEKEEIESEISPSMEKGKKAARGSKRKTQSFKDEDHYISSIPKNQHMEAGLSVKANDDFASNRLDSAVLDLVADDGTGIQKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDSHESTSLAGSYQRGRRNFKGSKKQHSVPNAHVRSEIKDMDQIRKERQKKANRTSYIKSKSTKGKKFGKNGKRRKGK 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01094 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Viun5g01094 773 Gene3D - 4 225 IPR027417 -
Viun5g01094 773 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Viun5g01094 773 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Viun5g01094 773 CDD SF2_C_DEAD 244 365 - -
Viun5g01094 773 MobiDBLite consensus disorder prediction 545 570 - -
Viun5g01094 773 SMART helicmild6 275 356 IPR001650 -
Viun5g01094 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Viun5g01094 773 Pfam DBP10CT (NUC160) domain 621 682 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Viun5g01094 773 MobiDBLite consensus disorder prediction 660 773 - -
Viun5g01094 773 MobiDBLite consensus disorder prediction 695 709 - -
Viun5g01094 773 MobiDBLite consensus disorder prediction 675 694 - -
Viun5g01094 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Viun5g01094 773 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Viun5g01094 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 686 - -
Viun5g01094 773 SMART ultradead3 37 244 IPR014001 -
Viun5g01094 773 MobiDBLite consensus disorder prediction 545 585 - -
Viun5g01094 773 CDD DEADc_DDX54 18 223 IPR033517 -
Viun5g01094 773 MobiDBLite consensus disorder prediction 750 773 - -
Viun5g01094 773 SMART DBP10CT_2 621 683 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Viun5g01094 773 MobiDBLite consensus disorder prediction 725 749 - -
Viun5g01094 773 Gene3D - 237 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01094 Viun-Chr5 7627269 7632883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01094 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 30.435 5.47e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01094 K14808 - gmx:100806274 1347.41