Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01093 ATGGGAGGCGAACGAAGTGCGGCGATGAAGAAGAAGAAGAACGCAAAATCTGGGGGCTTTGAGTCACTGGGTCTGAGTCCGAATGTGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTACCCACTCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCCGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCCGCGTTTCTTGTCCCCATGATTCACCGCCTCAACCAGCACGTTCCTCAGTCTGGAGTCAGAGCCCTGATCCTGTCCCCCACTAGGGACCTCGCCCTTCAGACTCTGAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTGTGAGTTTGTTAGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAGTTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCAGAGGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGAATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTTCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACACTACCCAGTGCTCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGATCCTCAGCTCGTTCGTCTCGACCTGGAGACTAGGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAAGAGGAGAAGTACCCCGCCCTGCTGTACTTGATCAGGGAACATATTGGCTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAATGTTTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGCGACATGGATCAGGATGCTCGCAAAATCCATGTATCCAAGTTTAGGGCTAGAAAGACCATGTTGTTGATTGTCACCGACGTGGCAGCTCGTGGCATTGACATTCCATTGCTTGATAATGTTGTCAATTGGGACTTCCCTCCCAAGCCTAAAATATTTGTCCATCGTGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCCAAACCCATCAAACCTGCTCCCTCTGAAGAAGAGCTCTTGCAGGATATGGATGGAGTAATGTCTAGATGTGACCAGGCAATGGCAAATAAAGAAACCATTTATGGTCGCTTCCCACAAAAAGTTATTGACCTTGTTTCAGACAGAATTAGGGAAGTTATTGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAGAAGAGTAAAGGATTTACCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAACAAACCATTTTGGAAGCTGAAGGAGAAGCAGCTAAATCAAAGCATCAACAGGAATGGGGCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCATGAACAACAGAAGTCTAAGGATAACAAGGAAAAGGAGGAAATCGAATCAGAAATCAGTCCTTCCATGGAGAAAGGGAAAAAAGCACGTGGTTCTAAGAGAAAGACCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCCAATGACGACTTTGCTTCAAATAGATTGGACTCTGCGGTCCTTGATCTAGTCGCAGATGATGGTACTGGCATTCAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGAGTTGCTGCAAACGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAGCGCTCACACGGTAAGATATCACTTAGAGGGACAAATGATGGTGATTCTCATGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGCAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAGTTCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGAAAAAAGCCAATAGGACTTCTTATATCAAGAGCAAGTCGACCAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGAAGAAAAGGCAAATAG 2319 0.4541 MGGERSAAMKKKKNAKSGGFESLGLSPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHVPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILSQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSKFRARKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPSEEELLQDMDGVMSRCDQAMANKETIYGRFPQKVIDLVSDRIREVIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQEWGDVMKRKRAIHENIINLVHEQQKSKDNKEKEEIESEISPSMEKGKKARGSKRKTQSFKDEDHYISSIPKNQHMEAGLSVKANDDFASNRLDSAVLDLVADDGTGIQKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDSHESTSLAGSYQRGRRNFKGSKKQHSVPNAHVRSEIKDMDQIRKERQKKANRTSYIKSKSTKGKKFGKNGKRRKGK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01093 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Viun5g01093 772 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 685 - -
Viun5g01093 772 Gene3D - 4 225 IPR027417 -
Viun5g01093 772 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Viun5g01093 772 MobiDBLite consensus disorder prediction 545 569 - -
Viun5g01093 772 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Viun5g01093 772 CDD SF2_C_DEAD 244 365 - -
Viun5g01093 772 MobiDBLite consensus disorder prediction 674 693 - -
Viun5g01093 772 MobiDBLite consensus disorder prediction 694 708 - -
Viun5g01093 772 SMART helicmild6 275 356 IPR001650 -
Viun5g01093 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Viun5g01093 772 MobiDBLite consensus disorder prediction 661 772 - -
Viun5g01093 772 MobiDBLite consensus disorder prediction 545 582 - -
Viun5g01093 772 MobiDBLite consensus disorder prediction 749 772 - -
Viun5g01093 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Viun5g01093 772 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Viun5g01093 772 SMART ultradead3 37 244 IPR014001 -
Viun5g01093 772 MobiDBLite consensus disorder prediction 724 748 - -
Viun5g01093 772 CDD DEADc_DDX54 18 223 IPR033517 -
Viun5g01093 772 SMART DBP10CT_2 620 682 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Viun5g01093 772 Pfam DBP10CT (NUC160) domain 620 681 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Viun5g01093 772 Gene3D - 237 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01093 Viun-Chr5 7627269 7632883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01093 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 30.435 5.63e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01093 K14808 - gmx:100806274 1348.57