Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01088 ATGGCTGCTTGCGCTTTGTTCACTGCTGCCACCAACATTACCGAAGATGGCAATGTTAACAACGCAACTGGAACTGCTGCTGCTGCTGCTAGTCCTCTCACAAGTGCCTCTAACTCCAGCAACATGAGCAACGACGAACAACACAACAACCTACATGGCATCATTCATTGCGACAGGAAAATGGTGAGGAAAAGAATGGCTTCTGAGATGGACCAGGTTAACAACGTTCATGTCACTCCCCCACACAACTCTTCCTCCACCACTGATTATCCTAGGTTTCCTCGTCGAAGCGCCGGCACCAACATGAACATGTTAGAAAAAGGGTCCACCACCACAGCTACTACGTTAGTAGCCGCAGATAACGTTGGCATCCCAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGTGCTCACCAACAACACCATCATTTCCAAGGACTCGTTGAAAGTCAAAGCCAGGACCAGCAAAACCCCGTGCCAGCAGTGTGTGGATTCTCGGGGTTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGTGACAACATCAACAATAGCACCGCCACCAACAACGTAAGAACCAGTGGTGGAAATATTGTCGACGTGGTTGCTTCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCAGCCGCCACAAGTGGTTGGATCGACGGTATATTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCGATTCCCCAGCTTATCAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTTGCAACGATTCTTGAATACAGGTTGCGTCTTCTCACCGAGTCCACCCCTCAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCTCCTTCTGTGTCCTCGGCGAAGCTCATGAACAATCGTGTGGATGGCATTGTTCCTAATTTGCACTTCACAGATGCATCAGGTGGTCCTGTGGTTGTGAATCAACACATGTTGTCCAATTGGGGTGTGCCTCCAATCACTCACCACCACGATAACAACGCCACCAACAACAACGCCAACACCAACACCAACCCTTCGGTTTCTTTGGTTACTTTACCTTCACCGCCGCCACCACCCCATTATTCACCGCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGCAGCAACCAGCAGTGCTGAGGTGGCACTCACAAGGAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAAAAAGACGAGGAGGGTCTGCATCTTCTCACTTTGCTTCTGCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGACGCCAACAAGATGTTGCTAGAGATTTCCCAATTGTCAACACCGTTTGGCACATCAGCGCAGCGTGTGGCGGCTTATTTCTCGGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATATGCCACTCTGCCACACACCCATCAAAGCCACAAGGTGGCATCGGCATTCCAAGTGTTCAACGGTATCAGTCCTTTCGTGAAGTTCTCACATTTCACGGCAAACCAAGCCATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTCTACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACTGGGCTTGGTACTTCCATGGAAGCACTCGAAGCCACGGGTAAACGTTTGTCCGATTTTGCAAACAAACTTGGCCTTCCCTTCGAGTTCTTTCCGGTGGCTGAGAAAGTCGGGAACCTCGACCCCGAGAGGCTCAACGTCAGCAAAACCGAAGCTGTTGCGGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAAGACCTAAGCAACAGTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCGTTATTTGACTCTCTTGGGTCTAGCTATGGGGAAGAGAGTGAAGAGAGGCATGTGGTGGAACAGCAACTATTGTCTAGGGAGATTCGCAACGTGCTAGCTGTTGGGGGGCCATCAAGAACTGGGGAACCAAAGTTTCACAATTGGAGGGAGAAGTTTCAGCAGTGTGGATTCAGAGGTATATCTCTAGCTGGTAATGCTGCAACTCAAGCTAGTTTACTCCTTGGTATGTTCCCATCAGAGGGTTATACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCATTTCATAATGGCACTGCCATTACACATCACAACTAG 2403 0.4923 MAACALFTAATNITEDGNVNNATGTAAAAASPLTSASNSSNMSNDEQHNNLHGIIHCDRKMVRKRMASEMDQVNNVHVTPPHNSSSTTDYPRFPRRSAGTNMNMLEKGSTTTATTLVAADNVGIPNYPTVTVTTNYSTMLLPSSTTINSSGVAPNYSAHQQHHHFQGLVESQSQDQQNPVPAVCGFSGLPLFPSQSQRNRDNINNSTATNNVRTSGGNIVDVVASSSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLATILEYRLRLLTESTPQNKRGTEGVPLPPSVSSAKLMNNRVDGIVPNLHFTDASGGPVVVNQHMLSNWGVPPITHHHDNNATNNNANTNTNPSVSLVTLPSPPPPPHYSPPQEKQPHPQEEDLAATSSAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNSGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHNGTAITHHN 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01088 800 ProSiteProfiles GRAS family profile. 422 787 IPR005202 -
Viun5g01088 800 MobiDBLite consensus disorder prediction 353 373 - -
Viun5g01088 800 MobiDBLite consensus disorder prediction 409 423 - -
Viun5g01088 800 Coils Coil 401 421 - -
Viun5g01088 800 MobiDBLite consensus disorder prediction 75 94 - -
Viun5g01088 800 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 391 782 IPR005202 -
Viun5g01088 800 MobiDBLite consensus disorder prediction 158 180 - -
Viun5g01088 800 MobiDBLite consensus disorder prediction 347 423 - -
Viun5g01088 800 MobiDBLite consensus disorder prediction 195 214 - -
Viun5g01088 800 MobiDBLite consensus disorder prediction 374 390 - -
Viun5g01088 800 Pfam GRAS domain family 432 787 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01088 Viun-Chr5 7587772 7591856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01088 413 790 GRAS Transcription Factor Family AT5G41920 55.013 7.68e-141 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g01088 GRAS 2.2e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01088 - - gmx:100806779 1270.37