Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01087 ATGGCTGCTTGCGCTTTGTTCACTGCTGCCACCAACATTACCGAAGATGGCAATGTTAACAACGCAACTGGAACTGCTGCTGCTGCTGCTAGTCCTCTCACAAGTGCCTCTAACTCCAGCAACATGAGCAACGACGAACAACACAACAACCTACATGGCATCATTCATTGCGACAGGAAAATGGTGAGGAAAAGAATGGCTTCTGAGATGGACCAGGTTAACAACGTTCATGTCACTCCCCCACACAACTCTTCCTCCACCACTGATTATCCTAGGTTTCCTCGTCGAAGCGCCGGCACCAACATGAACATGTTAGAAAAAGGGTCCACCACCACAGCTACTACGTTAGTAGCCGCAGGTACTTGTAGTAATAATAGCAATACTAATAATAATAATAATAACTATCATTTTAATAATAGTAACCATAATAGTAACAGTGGTAGTATTTCGTCAAGAGATAACGTTGGCATCCCAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGTGCTCACCAACAACACCATCATTTCCAAGGACTCGTTGAAAGTCAAAGCCAGGACCAGCAAAACCCCGTGCCAGCAGTGTGTGGATTCTCGGGGTTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGTGACAACATCAACAATAGCACCGCCACCAACAACGTAAGAACCAGTGGTGGAAATATTGTCGACGTGGTTGCTTCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCAGCCGCCACAAGTGGTTGGATCGACGGTATATTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCGATTCCCCAGCTTATCAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTTGCAACGATTCTTGAATACAGGTTGCGTCTTCTCACCGAGTCCACCCCTCAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCTCCTTCTGTGTCCTCGGCGAAGCTCATGAACAATCGTGTGGATGGCATTGTTCCTAATTTGCACTTCACAGATGCATCAGGTGGTCCTGTGGTTGTGAATCAACACATGTTGTCCAATTGGGGTGTGCCTCCAATCACTCACCACCACGATAACAACGCCACCAACAACAACGCCAACACCAACACCAACCCTTCGGTTTCTTTGGTTACTTTACCTTCACCGCCGCCACCACCCCATTATTCACCGCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGCAGCAACCAGCAGTGCTGAGGTGGCACTCACAAGGAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAAAAAGACGAGGAGGGTCTGCATCTTCTCACTTTGCTTCTGCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGACGCCAACAAGATGTTGCTAGAGATTTCCCAATTGTCAACACCGTTTGGCACATCAGCGCAGCGTGTGGCGGCTTATTTCTCGGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATATGCCACTCTGCCACACACCCATCAAAGCCACAAGGTGGCATCGGCATTCCAAGTGTTCAACGGTATCAGTCCTTTCGTGAAGTTCTCACATTTCACGGCAAACCAAGCCATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTCTACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACTGGGCTTGGTACTTCCATGGAAGCACTCGAAGCCACGGGTAAACGTTTGTCCGATTTTGCAAACAAACTTGGCCTTCCCTTCGAGTTCTTTCCGGTGGCTGAGAAAGTCGGGAACCTCGACCCCGAGAGGCTCAACGTCAGCAAAACCGAAGCTGTTGCGGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAAGACCTAAGCAACAGTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCGTTATTTGACTCTCTTGGGTCTAGCTATGGGGAAGAGAGTGAAGAGAGGCATGTGGTGGAACAGCAACTATTGTCTAGGGAGATTCGCAACGTGCTAGCTGTTGGGGGGCCATCAAGAACTGGGGAACCAAAGTTTCACAATTGGAGGGAGAAGTTTCAGCAGTGTGGATTCAGAGGTATATCTCTAGCTGGTAATGCTGCAACTCAAGCTAGTTTACTCCTTGGTATGTTCCCATCAGAGGGTTATACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCATTTCATAATGGCACTGCCATTACACATCACAACTAG 2502 0.482 MAACALFTAATNITEDGNVNNATGTAAAAASPLTSASNSSNMSNDEQHNNLHGIIHCDRKMVRKRMASEMDQVNNVHVTPPHNSSSTTDYPRFPRRSAGTNMNMLEKGSTTTATTLVAAGTCSNNSNTNNNNNNYHFNNSNHNSNSGSISSRDNVGIPNYPTVTVTTNYSTMLLPSSTTINSSGVAPNYSAHQQHHHFQGLVESQSQDQQNPVPAVCGFSGLPLFPSQSQRNRDNINNSTATNNVRTSGGNIVDVVASSSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLATILEYRLRLLTESTPQNKRGTEGVPLPPSVSSAKLMNNRVDGIVPNLHFTDASGGPVVVNQHMLSNWGVPPITHHHDNNATNNNANTNTNPSVSLVTLPSPPPPPHYSPPQEKQPHPQEEDLAATSSAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNSGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHNGTAITHHN 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01087 833 MobiDBLite consensus disorder prediction 380 456 - -
Viun5g01087 833 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 421 815 IPR005202 -
Viun5g01087 833 MobiDBLite consensus disorder prediction 407 423 - -
Viun5g01087 833 MobiDBLite consensus disorder prediction 130 150 - -
Viun5g01087 833 ProSiteProfiles GRAS family profile. 455 820 IPR005202 -
Viun5g01087 833 MobiDBLite consensus disorder prediction 228 247 - -
Viun5g01087 833 MobiDBLite consensus disorder prediction 75 94 - -
Viun5g01087 833 Pfam GRAS domain family 465 820 IPR005202 -
Viun5g01087 833 Coils Coil 434 454 - -
Viun5g01087 833 MobiDBLite consensus disorder prediction 386 406 - -
Viun5g01087 833 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01087 Viun-Chr5 7587772 7591857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01087 446 823 GRAS Transcription Factor Family AT5G41920 55.013 1.30e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g01087 GRAS 2.4e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01087 - - gmx:100806779 1291.95