Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01073 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCATATGGCACCAAGGAGTGAAGCTCCAAGTCAGGGTGGTCCTGCTTTGCCTGAAGCACCATCTGCAGCTATTGGTGTGTCACCAATGAGTGTTTCATTGGATGGAACATCAGTTAAGAAGAAAAGGGGCAGACCAAGAAAATATGGACCAGATGGGTTGGTGAATATGGCATTGTCACCAATGCCAATCTCATCTTCAGCACCATTTTCTAATAACTTTTCATCTGGGAAGCGGGGGAGACCAAGGGGGATGGATTACAAGCTGCCAAAGAAAGTTGGAGTGGATTATCTTGGTGGCTCTGATGGTACAAGCTTTATGCCCCATATCATTACTGTCAATAGTGGCGAGGACATAGCAATGAAGGTCATATCTTTTTCTCAACAAGGACCGCGTGCTATATGCATCTTATCAGCTAGTGGTGTAATTTCAAATGTTACACTACGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAACCAAGGAACAAGAAGCAGAGCTGGAGGAATGAGTGTTTCATTGTCAAGTCCAGATGGTCGCGTTGTCGGCGGTGGAGTTGCTGGTCTACTTGTAGCAGCAGGTCCTGTGCAGGTGGTGGTGGGAAGTTTTTTGCCATGCAACCAGCAAGATCAGAAGCCAAAGAAGCCAAAGTCTGATTATGCACCACCTACTGTTACCCCTGCCATTGCAGTGTCTTCTGCACCACCACCACCCTCTACCAATGGTGGTGAAAAGGAGATTGTCATGGGTGGACACATACTGCACAACTCAGGAGCAACCCTTAACTCAAACCTATCTCCTCCCTCGGCCTTTCGCCGCGAAAACTGGGTTAACATGCATTCCATGACAGACTCCATGAAATCAGCCACTGATATTAACATATCCTTGCCTGATAGTTAA 1017 0.469 MEGREGMSSGVTVIGAEAPSAYHMAPRSEAPSQGGPALPEAPSAAIGVSPMSVSLDGTSVKKKRGRPRKYGPDGLVNMALSPMPISSSAPFSNNFSSGKRGRPRGMDYKLPKKVGVDYLGGSDGTSFMPHIITVNSGEDIAMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRAGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCNQQDQKPKKPKSDYAPPTVTPAIAVSSAPPPPSTNGGEKEIVMGGHILHNSGATLNSNLSPPSAFRRENWVNMHSMTDSMKSATDINISLPDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01073 338 MobiDBLite consensus disorder prediction 1 74 - -
Viun5g01073 338 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Viun5g01073 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 246 - -
Viun5g01073 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 308 IPR039605 GO:0003680
Viun5g01073 338 Gene3D - 129 258 - -
Viun5g01073 338 FunFam AT-hook motif nuclear-localized protein 1-like 129 259 - -
Viun5g01073 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Viun5g01073 338 CDD DUF296 129 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01073 Viun-Chr5 7507037 7511671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01073 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.305 1.75e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01073 - - gmx:100777213 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01073 5 7507037 7511671 Viun5g01073 5 7507037 7511671 ECH
Viun5g01073 5 7507037 7511671 Viun10g01661 10 31418850 31423415 PCT