Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01060 ATGGCTACTCATCTTGCTGCAGCAAAGGCCACCGCGACGACGTCGTCTCAGGATAAACGACACCGTTCCATCTTCGATGTTCCGTCGAATTTCTTCGACTCTGCTCGCCTTCTCCCTTCTCCACACTCTTCCGTTTCCGATCACCACCCCGTAGGCCAAACCCAAACCCTTGAATCCTCCACAAACGACGTCGTTATTTTTGATGACTCTCAAAACGCTGTCGTTGCTGCGCCTAGGTTGACCTGCAATACCTGCAGAACTCAATTTGATTCCCTCCAAGACCAGCGTGCCCATTTCAAATCCGACATTCATCGGTTCAACGTGAAGCTGACAATTGCGGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTCAAAGACTATGATATGTCAAGTATATCGGGATCAGAAAGTGATGATTCAGAAAGTGAAATTGTACTGCATGACAAGTCGAGTGAAAATTTTAAACAGAAACTCTTCTTCCTTCTTCAGACAGGGCAGAGAGTTTCCGTCTGGAAGAGCTTGATTATGAATGTGACTGAAAATGTATTGTATGATGATGAAAAGGCAGAGAATGAAGTTGTTCAGAAGTTGAAATCTCTGACTGCTGAGCCCAGAAACAATACCCAATTGAGGATTGTTCTGCTTGCATCTGGTGGGCACTTTGCAGGTTGTGTCTTTGACGGTGATGTTGTTGTGGCTCACAAGACATTTCACAGATATGTTGTACGGGCCAAGGCAGGAAAAAAACAATCATCTAAAGATGCTTCTGGCAGGTCTATACATTCTGCTGGGGCCTCACTTCGTCGTTATAATGAACTTGCATTAAAGAAGGAAGTGCATGAACTGTTTACTGCTTGGAAACCCTATTTTGATGCCTCCAACTGCGTATTTATTCATGCTCCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGACCATATTTTGGTAATCAGCAGTGTGCTGTTAGAAACATTGCTTTGAGTGTTCGGAGGCCTACTTTCAGGGAAGTAAAGCGTGTATATAGTCAGTTGACTCAGGTAACCTACGAAGCTGATGAGAAGGAAGTTTTACAAAGCAAACAAGAGGATTTGGTATCAGTTCACATTTCTAAAATAAATGGCAGTCAAATCTCCAACCAAGGTAATGGGGCTGTGTTGGATGACAAAGATAAAGCTGAAGCTTGTTCAAGTAGACAAAATGATGAACCCTCCATTTCGAGTAATGGAGAAAGTGAGAATGAGCTATGTGGTAAATCAACTCCTTTACATCAAGCAGCCCAATCTGGAGACTCTGTAAAGGTTTTGGAACTCCTGGAACAGGGCTTCGATCCTTGCTCCAAAGATGAAAGGGGACGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATAATTTCAGAAGGTTTATGGCATCAAATCTTGACAAATGGGATTGGCATGCTGCCAAAGTGCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCTGAAAAAGATGCTAAGAGAAAAGCAAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCACCGTGGCAAAGAATGATTCCAAAACTGTGGAGAAGCTAGTAACTGCTTCAACATCGATAAAGGGACAATCTCAACTAAAAAGTGGCGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCCGAAAGAGAAAAGCGAGCAGCTGCTGCTGAGAGGAGAATGGCTGCCCTCAAAATTCAAGCTAACAGTACAACCGCTGCACCAAGCATGTCAGGGCCAAAAAGTGGATTAGCCGGTGACATTTACTGTTCCTGTTGCAATTCATCTCTTGCTGGCAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAAGGACATCCTGGATGATCAATGA 1983 0.4337 MATHLAAAKATATTSSQDKRHRSIFDVPSNFFDSARLLPSPHSSVSDHHPVGQTQTLESSTNDVVIFDDSQNAVVAAPRLTCNTCRTQFDSLQDQRAHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDMSSISGSESDDSESEIVLHDKSSENFKQKLFFLLQTGQRVSVWKSLIMNVTENVLYDDEKAENEVVQKLKSLTAEPRNNTQLRIVLLASGGHFAGCVFDGDVVVAHKTFHRYVVRAKAGKKQSSKDASGRSIHSAGASLRRYNELALKKEVHELFTAWKPYFDASNCVFIHAPSSSRQLLYDGERPYFGNQQCAVRNIALSVRRPTFREVKRVYSQLTQVTYEADEKEVLQSKQEDLVSVHISKINGSQISNQGNGAVLDDKDKAEACSSRQNDEPSISSNGESENELCGKSTPLHQAAQSGDSVKVLELLEQGFDPCSKDERGRTPYMLAHDKEVRNNFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEATVAKNDSKTVEKLVTASTSIKGQSQLKSGVQLSKEDQIRMAQAAEREKRAAAAERRMAALKIQANSTTAAPSMSGPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKDILDDQ 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01060 660 MobiDBLite consensus disorder prediction 399 425 - -
Viun5g01060 660 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g01060 660 ProSitePatterns Zinc finger C2H2 type domain signature. 82 104 IPR013087 -
Viun5g01060 660 Pfam Vms1-associating treble clef domain 623 655 IPR041540 -
Viun5g01060 660 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Viun5g01060 660 SUPERFAMILY Ankyrin repeat 427 478 IPR036770 -
Viun5g01060 660 MobiDBLite consensus disorder prediction 526 545 - -
Viun5g01060 660 Gene3D - 366 563 IPR036770 -
Viun5g01060 660 Coils Coil 572 608 - -
Viun5g01060 660 Coils Coil 501 546 - -
Viun5g01060 660 Pfam Bacteroidetes VLRF1 release factor 219 357 IPR041175 -
Viun5g01060 660 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 658 IPR047139 -
Viun5g01060 660 MobiDBLite consensus disorder prediction 406 425 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01060 19 607 C2H2 Transcription Factor Family AT1G01930 53.719 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01060 K26089 - gmx:100808912 1010.36