Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01008 ATGGTGGAAGATGGTGATGAGGTTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCCGTTGTTCTTGATAAAGCAAGAGAGGCCAAGGGATTTGCCGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTCACGATTATCAGATTTGTCAAGCCATCCATGCTTCTCAAAAAATGCTCTATGCAAGGAGCAGTTGCAGGCCGTGTCAAGGACGCTTGGGGAAGCGATTGAATTAGCTGAGTTGTGTATGAAGGAGAAGTATGAGGGGAAGCTTCGGATGCAGAGTGATCTAGATGCATTGACTGGGAAGCTCGATTTGAATTTGAGGGATTGTGGGCTTTTGATCAAAACCGGTGTGCTGGGTGAGGCTACTTTACCATTGGCTGTGTCAAGTTCTGTGGCAGAATCAGATGTTGCAACACACATAAGGGAATTGCTGGCGCGTCTTCAGATTGGGCACTTGGAAGCAAAGCACCAAGCTTTAGACAGCGTTGTTGAGGCCATGAAAGAAGACGAGAAGAATGTTTTAGCGGCTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAACTGCTTACAGCTACCTCTCCCAGGATAAGAGAGAAAACAGTAACTGTTATATGCTCGCTTGCAGAATCTGGTAGTTGCGAAAACTGGCTGGTTTCTGAGGGGGTTCTGCCACCTCTTATAAGGCTTGTTGAATCCGGCAGTGCGGTGGGGAAGGAGAAGGCTACGATATCGCTTCAGAGGTTGTCTATGTCAGCCGAAACAGCACGCGCAATAGTGGGGCATGGTGGGGTTCCTCCGTTGGTTGAACTTTGTCAAATCGGTGACTCTGTGTCACAGGCTGCGGCTGCTTGTACTCTGAAGAACATATCAGCTGTGCCTGAGGTGAGACAAACTCTGTCTGAAGAAGGGATTGTGAGGACCATGATCAATCTGCTTAACTGTGGTATTCTGCTAGGTTCCAAAGAGCATGCTGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGGAGGAATGTGATATCAGAAGGTGGTGTTAGGAGTCTTCTGACATATCTTGACGGTCCACTTCCTCAAGAATCCGCTGTCGGAGCGTTGAGGAATTTGGTCGGATCGGTCCCTGAGACATCCTTGGTCTCTCTGGGTTTGGTCCCCCGATTGGTTCACGTGTTAAAGTCCGGATCTTTAGGTGCCCAGCAAGCCGCGGTCGCCGCCATATGCAGAGTTTGCAGCACCACAGACATGAAGAAAATGGTTGGTGAAGCTGGATGCATCCCTCTCCTTGTGAAAATGCTTGAGGCCAAGTCAAACAGTGCTAGAGAGGTTGCTGCTCAAGCAATTGCAAGCCTTATGGTTGTGTCTCAGAATAGGAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCGAGTCCTCAGAACACTGCAAAAAAATATGCAGTTTCATGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCAATTGGGTATCTCAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAACGGTTGGAAAGAGGGAAATTAAGAACTTTTTTTAGCAAGAAATAG 1674 0.4695 MVEDGDEVAVDARSTEDWLLHAQELVPVVLDKAREAKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSRTLGEAIELAELCMKEKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSVAESDVATHIRELLARLQIGHLEAKHQALDSVVEAMKEDEKNVLAALGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVPPLVELCQIGDSVSQAAAACTLKNISAVPEVRQTLSEEGIVRTMINLLNCGILLGSKEHAAECLQNLTASNENLRRNVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVPETSLVSLGLVPRLVHVLKSGSLGAQQAAVAAICRVCSTTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRTFFSKK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01008 557 Coils Coil 334 354 - -
Viun5g01008 557 SMART arm_5 468 510 IPR000225 GO:0005515
Viun5g01008 557 SMART arm_5 182 222 IPR000225 GO:0005515
Viun5g01008 557 SMART arm_5 387 426 IPR000225 GO:0005515
Viun5g01008 557 SMART arm_5 305 346 IPR000225 GO:0005515
Viun5g01008 557 SMART arm_5 427 467 IPR000225 GO:0005515
Viun5g01008 557 SMART arm_5 264 304 IPR000225 GO:0005515
Viun5g01008 557 SMART arm_5 347 386 IPR000225 GO:0005515
Viun5g01008 557 SUPERFAMILY ARM repeat 152 534 IPR016024 -
Viun5g01008 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 555 - -
Viun5g01008 557 Gene3D - 331 540 IPR011989 -
Viun5g01008 557 Pfam Armadillo/beta-catenin-like repeat 268 304 IPR000225 GO:0005515
Viun5g01008 557 Pfam Armadillo/beta-catenin-like repeat 429 465 IPR000225 GO:0005515
Viun5g01008 557 Gene3D - 143 330 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01008 Viun-Chr5 6616794 6620505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01008 399 540 U-box Gene Family AT2G23140 30.556 1.94e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01008 - - gmx:100781453 984.171