Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01006 ATGTTTTGTGCATCATCCAATGTCTCTCAGGCTTGGTTTGGTTTTGTTGTGTTCGCCTACCAAACCGAAATCATGGTGGAAGATGGTGATGAGGTTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCCGTTGTTCTTGATAAAGCAAGAGAGGCCAAGGGATTTGCCGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTCACGATTATCAGATTTGTCAAGCCATCCATGCTTCTCAAAAAATGCTCTATGCAAGGAGCAGTTGCAGGCCGTGTCAAGGACGCTTGGGGAAGCGATTGAATTAGCTGAGTTGTGTATGAAGGAGAAGTATGAGGGGAAGCTTCGGATGCAGAGTGATCTAGATGCATTGACTGGGAAGCTCGATTTGAATTTGAGGGATTGTGGGCTTTTGATCAAAACCGGTGTGCTGGGTGAGGCTACTTTACCATTGGCTGTGTCAAGTTCTGTGGCAGAATCAGATGTTGCAACACACATAAGGGAATTGCTGGCGCGTCTTCAGATTGGGCACTTGGAAGCAAAGCACCAAGCTTTAGACAGCGTTGTTGAGGCCATGAAAGAAGACGAGAAGAATGTTTTAGCGGCTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAACTGCTTACAGCTACCTCTCCCAGGATAAGAGAGAAAACAGTAACTGTTATATGCTCGCTTGCAGAATCTGGTAGTTGCGAAAACTGGCTGGTTTCTGAGGGGGTTCTGCCACCTCTTATAAGGCTTGTTGAATCCGGCAGTGCGGTGGGGAAGGAGAAGGCTACGATATCGCTTCAGAGGTTGTCTATGTCAGCCGAAACAGCACGCGCAATAGTGGGGCATGGTGGGGTTCCTCCGTTGGTTGAACTTTGTCAAATCGGTGACTCTGTGTCACAGGCTGCGGCTGCTTGTACTCTGAAGAACATATCAGCTGTGCCTGAGGTGAGACAAACTCTGTCTGAAGAAGGGATTGTGAGGACCATGATCAATCTGCTTAACTGTGGTATTCTGCTAGGTTCCAAAGAGCATGCTGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGGAGGAATGTGATATCAGAAGGTGGTGTTAGGAGTCTTCTGACATATCTTGACGGTCCACTTCCTCAAGAATCCGCTGTCGGAGCGTTGAGGAATTTGGTCGGATCGGTCCCTGAGACATCCTTGGTCTCTCTGGGTTTGGTCCCCCGATTGGTTCACGTGTTAAAGTCCGGATCTTTAGGTGCCCAGCAAGCCGCGGTCGCCGCCATATGCAGAGTTTGCAGCACCACAGACATGAAGAAAATGGTTGGTGAAGCTGGATGCATCCCTCTCCTTGTGAAAATGCTTGAGGCCAAGTCAAACAGTGCTAGAGAGGTTGCTGCTCAAGCAATTGCAAGCCTTATGGTTGTGTCTCAGAATAGGAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCGAGTCCTCAGAACACTGCAAAAAAATATGCAGTTTCATGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCAATTGGGTATCTCAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAACGGTTGGAAAGAGGGAAATTAAGAACTTTTTTTAGCAAGAAATAG 1746 0.4679 MFCASSNVSQAWFGFVVFAYQTEIMVEDGDEVAVDARSTEDWLLHAQELVPVVLDKAREAKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSRTLGEAIELAELCMKEKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSVAESDVATHIRELLARLQIGHLEAKHQALDSVVEAMKEDEKNVLAALGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVPPLVELCQIGDSVSQAAAACTLKNISAVPEVRQTLSEEGIVRTMINLLNCGILLGSKEHAAECLQNLTASNENLRRNVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVPETSLVSLGLVPRLVHVLKSGSLGAQQAAVAAICRVCSTTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRTFFSKK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01006 581 SUPERFAMILY ARM repeat 176 558 IPR016024 -
Viun5g01006 581 Gene3D - 356 414 IPR011989 -
Viun5g01006 581 Gene3D - 167 355 IPR011989 -
Viun5g01006 581 Pfam Armadillo/beta-catenin-like repeat 292 328 IPR000225 GO:0005515
Viun5g01006 581 Pfam Armadillo/beta-catenin-like repeat 453 489 IPR000225 GO:0005515
Viun5g01006 581 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 36 579 - -
Viun5g01006 581 Coils Coil 358 378 - -
Viun5g01006 581 Gene3D - 415 560 IPR011989 -
Viun5g01006 581 SMART arm_5 411 450 IPR000225 GO:0005515
Viun5g01006 581 SMART arm_5 206 246 IPR000225 GO:0005515
Viun5g01006 581 SMART arm_5 451 491 IPR000225 GO:0005515
Viun5g01006 581 SMART arm_5 288 328 IPR000225 GO:0005515
Viun5g01006 581 SMART arm_5 371 410 IPR000225 GO:0005515
Viun5g01006 581 SMART arm_5 329 370 IPR000225 GO:0005515
Viun5g01006 581 SMART arm_5 492 534 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01006 Viun-Chr5 6616775 6620505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01006 423 564 U-box Gene Family AT2G23140 30.556 1.74e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01006 - - gmx:100781453 984.171