Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00995 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGCTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATATGTGGAAGGCTAAGAGGAGGTGTTGAATCTCGGATGGTGTATGAGATTGAATCAAGAATTGATATTGAACAGCCAGAACATCATGTTAATGACCCTGAATCAGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTTTTGCGTATCATGCCGAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGCCCAGTTTGCCGTCTGCCACTGAAGAACTCTTCTGAAACAAAACATGTAAGACCTGTGACGTTTACCATGAGCCAATCCCTTGATGAGTCTCACACATCAGAAAGAAATGAAAATGTAGAGACACATGATGAAGAAGCTACTCCTACTGCAGCCAGTAACTCTTTGCAACAACCAACTTCAGGTGAAGAAGGAGCAAGGCAATGA 588 0.4235 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMVYEIESRIDIEQPEHHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSERNENVETHDEEATPTAASNSLQQPTSGEEGARQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00995 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Viun5g00995 195 MobiDBLite consensus disorder prediction 158 172 - -
Viun5g00995 195 PANTHER OS11G0150450 PROTEIN 1 181 - -
Viun5g00995 195 MobiDBLite consensus disorder prediction 173 195 - -
Viun5g00995 195 SUPERFAMILY RING/U-box 80 139 - -
Viun5g00995 195 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Viun5g00995 195 SMART ring_2 90 131 IPR001841 -
Viun5g00995 195 CDD RING-H2_EL5-like 89 132 - -
Viun5g00995 195 Pfam Ring finger domain 89 132 IPR001841 -
Viun5g00995 195 MobiDBLite consensus disorder prediction 147 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00995 Viun-Chr5 6525269 6527513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00995 79 135 C3H Transcription Factor Family AT4G10160 54.386 2.88e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00995 - - gmx:100780922 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00995 5 6525269 6527513 Viun5g00995 5 6525269 6527513 ECH