Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00992 ATGGGGGTTGGTGGTAATTTCTGGGAGCTGCTAAAGCCCTATGCGCGCCGCGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTATCATTCTGGATTGTTCAGCATGAAAATGCCATGAAAGCTACTCATGTCAGAAAACCTCACCTCAGACTTACCTTCTTCCGGACCATAAATCTCTTCTCCAAGTTTGGGGCACTTCCTGTGTTCATTGTTGATGGAACTCCATCACCATTGAAAGCACAGTCCAGGATTGCAAGATATTTTCGGTCTTCTGGCATTGAGTTGACTAGCTTGCCAGTCTCAGAAGGTGTTTCAGCAGATAGGAGCAGTCTGTTTTCAAGTCGAGTTCAAGAATGTGTGGAACTGGGCAAACTACTTGGAATGCCTGTACTACAGGCTAAAGGAGAGGCCGAAGCACTCTGCGCTCAATTAAATAATGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCGTTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAACATGTCAGATATTGAAGCTGGACTCGGATTGAAGAGGAAACACTTGATAGCTATCTCTCTTTTAGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTTGATAATGCACTTCATTTTGCTAAGGCTTTTAATGAAGATGATATATTGAACAGATTACGGGAGATAGGCAAAGGGGGCAATACTTCACAAATTCCCAGCTGCACTATATTCGAGGACAACAAAGATGTTGATGGAAACTGCACGAATATAAAACAACCTCATTGCTCATTATGTGGGCATCCTGGCAGCAAGAAAGATCATATGAAATTTTCTTGTGAATACTGTGTCAAAAAGGATGATGAAGGCTGCCGGAGAAAACCAGAGGGTTTTAAATGTGATTGCTGCTCCTGTGTTTTGAATAGGAGACATAAGGAGCAAAAAAGAGAGGAAAATTGGTACTCAAAAATTTGTCTCAAAATTGCAGAGGAGCCAAACTTTCCCAAAGATGAAATCATTGACATGTACTTATGCAATGACAATGGTTACTTTTCAGCAAGTGATGGTCCTCGGATCATATGGGGAAAACCTAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCGTTGGGATCCATCCTACATTCGACGGACTATGTTTCCTATGATGTCCACTATCTTTCTGAGAGATATGTCCACTACACCTACGGGAGAAACTTTGTTATTTGGGCAATATGAGTTTGATTCGGTTGAACGTGTGAAGATGAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGTGCAGGGGTAAACATTAACACCAGCAAAGTTCCATCAAATGAATCCAGTGCGCAACAAGATGTAGTAGAGCTTGATGAAATGGTGGATCTACTGGACGACGCTCCTGAGATTCATGTAGATGGATGTAGCTTTCTGTTTACAGATGAAAACATGGACCTAGTAGGGACTGCTTTTCCAGCAGAAGTCAAAAGTTTTTTGCAGGAGCAGGAAAGGAAAAGGAGAAAGAACTCAAAATCAAGGTGCCAAGAAAATGAAAACTCAGTTTCTCCAAACTCAAGAAGTACTCAGCTAAACATCACAGAGTTCTTTCCATCAACCAAAATTAAACATCGTCAATCAAAACAAAGAGAAGAATCATCCAATGATGCTGATAGTGAGGGCAGCAAGAGTTCCAAAATTAAAAGAAAAGTGTCTAATTCTGACAATCTTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGACTAG 1824 0.4106 MGVGGNFWELLKPYARREGFDFLRNKRVAVDLSFWIVQHENAMKATHVRKPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKAQSRIARYFRSSGIELTSLPVSEGVSADRSSLFSSRVQECVELGKLLGMPVLQAKGEAEALCAQLNNEGHVDACITADSDAFLFGAKCVIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDNALHFAKAFNEDDILNRLREIGKGGNTSQIPSCTIFEDNKDVDGNCTNIKQPHCSLCGHPGSKKDHMKFSCEYCVKKDDEGCRRKPEGFKCDCCSCVLNRRHKEQKREENWYSKICLKIAEEPNFPKDEIIDMYLCNDNGYFSASDGPRIIWGKPNIEMLIDFLNFHQRWDPSYIRRTMFPMMSTIFLRDMSTTPTGETLLFGQYEFDSVERVKMRYGYQFYVVKWKRAGVNINTSKVPSNESSAQQDVVELDEMVDLLDDAPEIHVDGCSFLFTDENMDLVGTAFPAEVKSFLQEQERKRRKNSKSRCQENENSVSPNSRSTQLNITEFFPSTKIKHRQSKQREESSNDADSEGSKSSKIKRKVSNSDNLPKSVRRRLLFD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00992 607 SMART xpgn3 1 97 IPR006085 GO:0004518
Viun5g00992 607 Gene3D - 198 260 - -
Viun5g00992 607 FunFam Flap endonuclease GEN-like 1 2 197 - -
Viun5g00992 607 Gene3D - 5 197 - -
Viun5g00992 607 CDD PIN_GEN1 2 202 - -
Viun5g00992 607 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 565 IPR006084 -
Viun5g00992 607 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
Viun5g00992 607 MobiDBLite consensus disorder prediction 535 559 - -
Viun5g00992 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Viun5g00992 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Viun5g00992 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Viun5g00992 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Viun5g00992 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Viun5g00992 607 MobiDBLite consensus disorder prediction 522 607 - -
Viun5g00992 607 MobiDBLite consensus disorder prediction 560 607 - -
Viun5g00992 607 SMART xpgineu 128 198 IPR006086 GO:0004518
Viun5g00992 607 FunFam Flap endonuclease GEN-like 1 198 256 - -
Viun5g00992 607 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Viun5g00992 607 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 416 IPR036279 -
Viun5g00992 607 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00992 1 232 Core DNA Replication Machinery Family AT5G26680 28.235 4.69e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00992 K15338 - gmx:100779848 974.541