Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00948 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAGAACTGCTTCCGATGCAGTCACTGCAAGGGATACCTCACGATGAGTACATACTCTTCAATGGACGGTGTCCTCTACTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACAGCAAGATCTTCTGAAAAACAAAATGAGATGAATAAGACCCCCAACCGACTCTCGTCCATGTTCAGTGGAACTCTAGACAAATGTTCAGTTTGCTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGACTTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTAGACGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACCATCACGTACTCCAAGCTGCTGCAAACAGGAAGAATGTCACACCACCTCCTGAACCAGTCGAAGAGGAAGAACCACCAAAGCCAAAGGAACCTGAAGAGGAAGAAACAGAAGAAAAATCCTAA 627 0.445 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKTCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKNVTPPPEPVEEEEPPKPKEPEEEETEEKS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00948 208 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Viun5g00948 208 PANTHER OS06G0237300 PROTEIN 6 86 - -
Viun5g00948 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Viun5g00948 208 MobiDBLite consensus disorder prediction 176 208 - -
Viun5g00948 208 Pfam LIM domain 10 65 IPR001781 -
Viun5g00948 208 Pfam LIM domain 106 161 IPR001781 -
Viun5g00948 208 FunFam LIM domain and actin-binding 1 100 170 - -
Viun5g00948 208 Gene3D Cysteine Rich Protein 5 72 - -
Viun5g00948 208 Gene3D Cysteine Rich Protein 102 170 - -
Viun5g00948 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Viun5g00948 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Viun5g00948 208 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Viun5g00948 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Viun5g00948 208 SMART lim_4 105 157 IPR001781 -
Viun5g00948 208 SMART lim_4 9 61 IPR001781 -
Viun5g00948 208 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Viun5g00948 208 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00948 Viun-Chr5 6028656 6030921 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Viun5g00948 LIM 1.9e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00948 - - gmx:100779513 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00948 5 6028656 6030921 Viun5g00948 5 6028656 6030921 ECH
Viun5g00948 5 6028656 6030921 Viun10g01850 10 33429699 33431942 PCT