Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00938 ATGGTTATGGTTACAACAGGTGGTAGCAGCCTGAAAGACGATATTATGCGTTTATATCAACCAGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAGGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCCATAGAACAGCTGATTCAATTTCTTCCTGGAACCCGTCAAATTCTGATGTTTTCTGCTACGTTTCCTGTTACTGTTAGGGACTTCAAAGATAGATATCTACGTAAGCCATATGTTATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATTTTCTGCAATTCCGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCGTGTTTCTATATCCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGGGCCTGCAGAAATCTTGTTTGTACTGATCTCTTCACTAGGGGAATAGACATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAAAACTCAGAAACCTACCTACACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCGGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAAGCAATATATTGCCGGTGA 834 0.3993 MVMVTTGGSSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGTRQILMFSATFPVTVRDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00938 277 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 104 IPR014001 -
Viun5g00938 277 SMART helicmild6 154 235 IPR001650 -
Viun5g00938 277 CDD SF2_C_DEAD 115 244 - -
Viun5g00938 277 Gene3D - 1 111 IPR027417 -
Viun5g00938 277 Pfam Helicase conserved C-terminal domain 129 235 IPR001650 -
Viun5g00938 277 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 114 274 IPR001650 -
Viun5g00938 277 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 2 276 - -
Viun5g00938 277 Pfam DEAD/DEAH box helicase 3 91 IPR011545 GO:0003676|GO:0005524
Viun5g00938 277 Gene3D - 112 277 IPR027417 -
Viun5g00938 277 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 50 58 IPR000629 -
Viun5g00938 277 FunFam ATP-dependent RNA helicase DDX6 108 277 - -
Viun5g00938 277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 257 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00938 Viun-Chr5 5975351 5977689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00938 7 270 Eukaryotic Initiation Factors Gene Family AT3G19760 37.970 5.40e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00938 K12614 - pvy:116118171 551.592