LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g00935	ATGAACAATAGAGATAGAGAGAGGTACCCACCTGGGATGGGGTTAGGAAGAGGGTTGAACTCGAACCCTGGGTTTCAACCGAGACCACATCAGCAACATCAATATGTGCAGAGGCACATGGTGCAGCACCATCATCCGCAACAGTATCAACAGAACCACCAGCACCACCAGCAGCAGCAACAACAGCATCATCAACACCATCAACATCAGCAGCAGCAACAACAACAACAGCAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACACCAACGTTGTGGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAATATCCCTGCACCTGATACACGCTACAAGACAGAGGATGTGACAGCAACTAAAGGCAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATACGAGAAGGGTTTTGAGAGACCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACTGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTAATATTGGTCCCAACTCGAGAGCTGGCTTTGCAAACATCCCAAGTGTGTAAAGAACTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAGGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCCATAGAACAGCTGATTCAATTTCTTCCTGGAACCCGTCAAATTCTGATGTTTTCTGCTACGTTTCCTGTTACTGTTAGGGACTTCAAAGATAGATATCTACGTAAGCCATATGTTATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATTTTCTGCAATTCCGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCGTGTTTCTATATCCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTCTTCACTAGGGGAATAGACATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAAAACTCAGAAACCTACCTACACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCGGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAAGCAATATATTGCCGGTGA	1539	0.4185	MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQQHQYVQRHMVQHHHPQQYQQNHQHHQQQQQQHHQHHQHQQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDSSSQDWKARLNIPAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGTRQILMFSATFPVTVRDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g00935	512	Pfam	Helicase conserved C-terminal domain	364	470	IPR001650	-
	Viun5g00935	512	Pfam	DEAD/DEAH box helicase	163	326	IPR011545	GO:0003676\|GO:0005524
	Viun5g00935	512	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	349	509	IPR001650	-
	Viun5g00935	512	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	169	339	IPR014001	-
	Viun5g00935	512	SMART	ultradead3	157	353	IPR014001	-
	Viun5g00935	512	Gene3D	-	343	512	IPR027417	-
	Viun5g00935	512	CDD	DEADc_DDX6	140	340	-	-
	Viun5g00935	512	SMART	helicmild6	389	470	IPR001650	-
	Viun5g00935	512	FunFam	ATP-dependent RNA helicase DDX6	343	512	-	-
	Viun5g00935	512	Gene3D	-	92	342	IPR027417	-
	Viun5g00935	512	MobiDBLite	consensus disorder prediction	24	80	-	-
	Viun5g00935	512	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	53	511	-	-
	Viun5g00935	512	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	138	166	IPR014014	GO:0003724
	Viun5g00935	512	MobiDBLite	consensus disorder prediction	1	80	-	-
	Viun5g00935	512	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	285	293	IPR000629	-
	Viun5g00935	512	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	208	492	IPR027417	-
	Viun5g00935	512	CDD	SF2_C_DEAD	350	479	-	-
	Viun5g00935	512	FunFam	ATP-dependent RNA helicase DDX6	119	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g00935	Viun-Chr5	5959368	5965420	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g00935	138	509	Eukaryotic Initiation Factors Gene Family	AT3G19760	37.968	8.96e-93	287

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g00935	K12614		-	gmx:100788032	876.7