Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00894 ATGGCTGTGGTGAGTCCTGTGCCTGCAACATCACAAAGGATGGGTTCTGTGAGGTCACCTTCTGATGCTAGTGGGGAAATTTTGGAGGAGCCTAATCCAGGTGTTGTTGATCAGCCAATCTATGTTGCCGTAGCAAAAGAAGTGAAGGAGAGCAGATCAAATCTGATATGGGCAATTCAACACTCCGGAGGAAAGAGGATTTGCATTCTTTATGTTCATGTTCCTGCAACAATGATCCCCCTACTGGGAGGTAAATTTCCCACAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAACAAAAGCAGGGCATGCATAAGACTCTGGATGAATATCTTCAAATCTGTCGACGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAGCATTGAAAAAGGAATCATAGAGCTTGTATCTCAGCATGGCATCCGAAAGCTTGTAATGGGAGCAGCATCAGATAAGTACTATAATAGGAGAATGATGGACCTTAGATCTAAGAAAGCCATCTATGTGTGTAAACAAGCTCCAGCTTCTTGTCACATACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCACAGTTTGAATGAAGGTACTGTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGAACTTTCAGATCACAGTCTGCTACACTGGGGCAAGATCGTCGAGGAAATCTAACCAATCATGCGCTAGAGCTTCTACGCAGAGTGAGGTCTGCCGGTGATGGACATGTAGCAAGCTTTCCGGCTGTTTCTTCTCCAGAAGAAACTGTAGGGTTTTCAACTCCACGTGACAGGACGGGTACAGAAGTAAGTTCTGATGAATCAGAGAGGCTGTCAAGGATGAGTCCTTCTGGCTTGTCAACATGCTCTGACAGTGCAGTTGATATAGCTTTGAACCCAGGATTGATTACTGAAAGCAGTGAGAATGCATTAGAGTTGACTTTGAGTCAGCTGGTTATAGAGGATCTTCATCATTCATCTCCCCCTAGTACACTGGATGGTGGAATAGATGATACTATCTACGACCAGCTTCAACAAGCTATGACCGAAGCTGAGGATGCTTCCCTAACTGCGTATAAAGAAACTGTAAGGCGTAGGAATGCTGAAAAAGAAGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACGGAGGAGTTGAAGCTGAGGAAATTGGCAGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATGCCAAGAGACTGAGAGACAAAGTTAAGGAAGAACTCCGCCTCGCCCTTGATCAGAAGGCATCTCTGGAGAGTCAGATTGCATCATCTGAACTTATTATAAAGGAGCTGGAGCAGAAGATTGTATCTGCTGTTGATCTGTTACAGAGCTACAAGAATGAACGAGAGGAATTGCAGATTCAGCGTGATAATGCATTAAGAGAGGCTGAAGAATTGAGGAAAAAGCAAGGAGAGGCCTCAAGCTCCCATGTCCCTCAATTGTTCTCAGAATTCTCTTTTTCAGAGATTAAAGAAGCAACAAATAACTTCAATCCAACCTTAAAAATAGGTGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGAGTTACACTGAGGTGGCTATAAAAAGATTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGTTGAGCAAGCTAAGGCATCCCAATCTTATCACACTCATTGGAGCCTGCCCAGATGCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGACCGCCTTGCCTGCAAGGATAATACCCCTCCATTATCGTGGCAAACTCGAATCCGTGTTGCTTCTGAACTATGCTCTGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCGTAGTGCATGGTGACTTGAAACCATCCAACATTCTCCTTGATGCAAACCTCATTAGCAAGCTTAGTGACTTTGGAATATGTCGTATACTATCGAACTGTGAGAGTTCCAGTAGCAATTCTACACAGTTTTGGAAAACTGACCCAAAGGGAACATTTGTCTACATGGATCCTGAATTTCTTGCCTCAGGGGAACTTACTCCGAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACAGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGGATTAGATACTGGAAAGTTGAAATCCCTTTTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAATTGGCTCGCTTGGCTTTGAGATGTTGTGATATGAACCGAAAGAGCCGTCCAGATCTTTATTCTGATGTCTGGAGGATACTTGATGCAATGAGGGTTTCTTCTGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGTCTTTCACAACCTCCATCATATTTTATCTGCCCAATCTTCCAGGAAGTAATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTAATGACAACTCACCAATGACTAATGGTAAGCTTGCACATCACAATCTTGTTCCCAATCGTGCTCTTCGCTCTGCAATCCATGACTGGCTTCAAAACCACTGA 2652 0.4385 MAVVSPVPATSQRMGSVRSPSDASGEILEEPNPGVVDQPIYVAVAKEVKESRSNLIWAIQHSGGKRICILYVHVPATMIPLLGGKFPTSALKEEQVQAYWEEQKQGMHKTLDEYLQICRRMGVRAEKLHIEMDSIEKGIIELVSQHGIRKLVMGAASDKYYNRRMMDLRSKKAIYVCKQAPASCHIQFICKGHLIHTRDHSLNEGTVEVASPLVQQVPNSVRTFRSQSATLGQDRRGNLTNHALELLRRVRSAGDGHVASFPAVSSPEETVGFSTPRDRTGTEVSSDESERLSRMSPSGLSTCSDSAVDIALNPGLITESSENALELTLSQLVIEDLHHSSPPSTLDGGIDDTIYDQLQQAMTEAEDASLTAYKETVRRRNAEKEAFEAIRKAKASESLYTEELKLRKLAEEELRKEKEELENAKRLRDKVKEELRLALDQKASLESQIASSELIIKELEQKIVSAVDLLQSYKNEREELQIQRDNALREAEELRKKQGEASSSHVPQLFSEFSFSEIKEATNNFNPTLKIGEGGYGSIFKGVLSYTEVAIKRLHSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDAWALVYEYLPNGSLEDRLACKDNTPPLSWQTRIRVASELCSALIFLHSSKPHSVVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNSTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYGLDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGTNSFGLSSEGLSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNGKLAHHNLVPNRALRSAIHDWLQNH 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00894 883 Gene3D HUPs 39 184 IPR014729 -
Viun5g00894 883 Pfam U-box domain 814 883 IPR003613 GO:0004842|GO:0016567
Viun5g00894 883 CDD STK_N 39 192 - -
Viun5g00894 883 SMART serkin_6 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00894 883 FunFam receptor-like protein kinase FERONIA 488 597 - -
Viun5g00894 883 SUPERFAMILY Protein kinase-like (PK-like) 502 783 IPR011009 -
Viun5g00894 883 MobiDBLite consensus disorder prediction 260 300 - -
Viun5g00894 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 883 IPR013083 -
Viun5g00894 883 ProSiteProfiles Protein kinase domain profile. 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00894 883 SMART Ubox_2 816 879 IPR003613 GO:0004842|GO:0016567
Viun5g00894 883 Pfam Protein kinase domain 530 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00894 883 Coils Coil 400 497 - -
Viun5g00894 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Viun5g00894 883 Gene3D Phosphorylase Kinase; domain 1 495 597 - -
Viun5g00894 883 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Viun5g00894 883 ProSiteProfiles U-box domain profile. 812 883 IPR003613 GO:0004842|GO:0016567
Viun5g00894 883 Gene3D Transferase(Phosphotransferase) domain 1 598 797 - -
Viun5g00894 883 PANTHER OS02G0152300 PROTEIN 40 877 - -
Viun5g00894 883 SUPERFAMILY RING/U-box 807 882 - -
Viun5g00894 883 CDD RING-Ubox_WDSUB1-like 814 869 - -
Viun5g00894 883 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 56 159 - -
Viun5g00894 883 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00894 Viun-Chr5 5616153 5622359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00894 1 883 U-box Gene Family AT2G45910 52.974 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun5g00894 Pkinase 9.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00894 - - gmx:100807515 1511.12