Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00890 ATGGATAAAGAGAAAGTCTCACAAACCCCAAAAAGAATGACAAGGTCTTCGGCTTCATCTCCGACTTCCACTTCAAATAATGCAATTGCAGCAAAAGTAAATAGCCTTGAACCTCTGACAATCAACGACCTTTTAGTTGGAGGAGATCCAATCAGTCTAGATGACATAATTTCCAACTTTCCTGGTAGAAGAAATCAGATTCTTGAGATTGTGCGTCTTTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTTGTATATGGAGGCCCTTGTACCGGAAAAACCAGTATCATTCTTCGATTGTTCAGGCATCTCAAAAGGCCTCTTGTTTATTCTAGTTGTAGGACATGTTATAACCAGGGTATCTTGTTTGAATCTATTCTAAATCAGTTATTTCTCCATAGAAAAAATTCTGCCAATGGTTATGCAAATGCAAAACGCTGTGACAGACCGTCTGATTTTGTCAACTTTCTTCGGGAAGCATTGACCAATGTTATAAACAATCTCAAAGAGAAGTCAGAGAAGTTGGTCTCAAATAAGATGACACAAGAGAAAACTGGAAACATGATCTACTTGGTGTTTGACAATTTTCATCTTGTTAAGGAATGGGATAAGAATTCTACTATATTGCCCCTGCTGTTTAATCTCTATGATATGCTAAAGATGCATGAGGTGGGTCTGATTTTTATCAGTAGTACTTCCGCAGACACATTTTACTCCAACATGGGATATGTAGAGCCTATCCCCGTTTACTTTCCTGATTACACAGAAGGTGATATTCGTCAAATATTATTGAGAAACCAAGCGAACCAGAAGCTTTATTCCTCATTTCTCGATGTAGTTCTGAAGTCTTTTTATGGAATTACAAAGCAAGTTGGTGATTTGTCTGCCGCCTTAAAGCCACTATATGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAAGGAGTTGCTCCTGATCAACAGATGAGGCGAAGGCTACTTGCTCATATCAACCCTCATATTGGCCCCTCTTTGAATGAGATATTTAAGGTTTCATCCCTTTCTTCTACTGAAGTGGAGACCCAGAAAGAGGAAAAGCGGAAGGGAAATCCCAGGAGATTGGAGAAATCTGAAGAACTTGGCAGTCTTGATTTTCATATGTCTACTAGTTCAAAGTATCTTCTGATTTCAGCATTCCTTGCCTCCAGAAACCCAGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGGAAGAGAAAGCCCTCTGAGAAAGCGATGGAACGGAAGGAAACTTTGGAAGAGGAGCTACTAATGAAAGGGCCTGGAACTTTTCCATTGGAGAGGTTATTAGCCATCTTTCAGTGCCTTGTATCAGTCGGAGAAGATGATGAAGAACCAAACAATGATGGATTTGGAGTTGAGGGTGGCAGTGGTGGACTAATGTCTGATGTTCTTTTGCAGCTGTCTAGTCTCTGCAATGCCAATCTTATATTCAAAGGTAGAAGCTGTCCAATTGAGGGCTCAACTCGTTATCGATCAACCATTTCCGAAGATCTGGCTTTGAAGGTTGCAAGGAGCCTTAAGTTCCCATTATCAAAGTATTTGTATAGAAGTTAG 1620 0.3981 MDKEKVSQTPKRMTRSSASSPTSTSNNAIAAKVNSLEPLTINDLLVGGDPISLDDIISNFPGRRNQILEIVRLLGPLNSPMLPLFVYGGPCTGKTSIILRLFRHLKRPLVYSSCRTCYNQGILFESILNQLFLHRKNSANGYANAKRCDRPSDFVNFLREALTNVINNLKEKSEKLVSNKMTQEKTGNMIYLVFDNFHLVKEWDKNSTILPLLFNLYDMLKMHEVGLIFISSTSADTFYSNMGYVEPIPVYFPDYTEGDIRQILLRNQANQKLYSSFLDVVLKSFYGITKQVGDLSAALKPLYEKYCEPLSDKGKGVAPDQQMRRRLLAHINPHIGPSLNEIFKVSSLSSTEVETQKEEKRKGNPRRLEKSEELGSLDFHMSTSSKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKAMERKETLEEELLMKGPGTFPLERLLAIFQCLVSVGEDDEEPNNDGFGVEGGSGGLMSDVLLQLSSLCNANLIFKGRSCPIEGSTRYRSTISEDLALKVARSLKFPLSKYLYRS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00890 539 Coils Coil 155 186 - -
Viun5g00890 539 MobiDBLite consensus disorder prediction 404 431 - -
Viun5g00890 539 MobiDBLite consensus disorder prediction 11 26 - -
Viun5g00890 539 Gene3D - 60 241 IPR027417 -
Viun5g00890 539 Pfam AAA ATPase domain 59 218 IPR041664 -
Viun5g00890 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 274 IPR027417 -
Viun5g00890 539 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 52 538 IPR020796 GO:0000808|GO:0005634|GO:0006260
Viun5g00890 539 MobiDBLite consensus disorder prediction 1 26 - -
Viun5g00890 539 MobiDBLite consensus disorder prediction 353 374 - -
Viun5g00890 539 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 536 IPR047088 -
Viun5g00890 539 MobiDBLite consensus disorder prediction 350 374 - -
Viun5g00890 539 FunFam Origin of replication complex subunit 5 60 241 - -
Viun5g00890 539 MobiDBLite consensus disorder prediction 410 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00890 Viun-Chr5 5561214 5563565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00890 3 538 Core DNA Replication Machinery Family AT4G29910 57.565 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00890 K02607 - gmx:100782175 915.99